Examples of org.sbml.jsbml.Annotation

org.sbml.jsbml.Annotation
An Annotation represents the annotations of an {@link SBase} element. Itcontains the list of {@link CVTerm} objects, a {@link Map} containing an XMLname space and a {@link String} containing all the annotation elements ofthis name space. @author Marine Dumousseau @author Andreas Dräger @since 0.8 @version $Rev: 1533 $

      Object contextObject) {
    
    // The namespace of this parser is declared in a RDF subnode of an annotation.
    // adds the namespace to the RDFAnnotationNamespaces HashMap of annotation.
    if (elementName.equals("RDF") && contextObject instanceof Annotation){
      Annotation annotation = (Annotation) contextObject;
      
      annotation.addRDFAnnotationNamespace(localName, prefix, URI);
    }
  }

View Full Code Here


    // A CreatorParser can only modify a contextObject which is an Annotation instance.
    // The namespace of this parser should be associated with the creator subnode of an annotation.
    // Creates a ModelHistory instance and set the modelHistory of annotation.
    if (elementName.equals("creator") && contextObject instanceof Annotation){
      Annotation annotation = (Annotation) contextObject;
      History modelHistory = new History();
      annotation.setHistory(modelHistory);
      
      return modelHistory;
    }
    else {
      // TODO : !elementName.equals("creator"), SBML syntax error?

View Full Code Here

    // The namespace of this parser should be declared in a 'RDF' subNode of
    // an annotation.
    // Sets the namespace to the RDFAnnotationNamespaces HashMap of
    // annotation.
    if (elementName.equals("RDF") && contextObject instanceof Annotation) {
      Annotation annotation = (Annotation) contextObject;


      annotation.addRDFAnnotationNamespace(localName, prefix, URI);
    }
  }

View Full Code Here

    logger.debug("processStartElement : " + elementName);
    
    // When this parser read a starting element tag, it can modify a
    // contextObject which is an Annotation instance.
    if (contextObject instanceof Annotation) {
      Annotation annotation = (Annotation) contextObject;


      if (!annotation.isSetHistory()) {
        annotation.setHistory(new History());
      }
      
      if (annotation.isSetHistory()) {
        History history = annotation.getHistory();


        // If the localName of the node is 'created' and if it has not
        // been read yet,
        // the previousElement of this parser is set to 'created' and
        // hasReadCreated is set

View Full Code Here

0 1 2 3 4 5 6 7

TOP

Related Classes of org.sbml.jsbml.Annotation

org.sbml.jsbml.CVTerm.Type

org.sbml.jsbml.test.TestAnnotation

org.sbml.jsbml.util.filters.CVTermFilter

org.sbml.jsbml.util.TreeNodeAdapter

org.sbml.jsbml.xml.parsers.AbstractReaderWriter

org.sbml.jsbml.xml.parsers.AnnotationParser

org.sbml.jsbml.xml.parsers.BiologicalQualifierParser

org.sbml.jsbml.xml.parsers.CreatorParser

org.sbml.jsbml.xml.parsers.DatesParser

org.sbml.jsbml.xml.parsers.LayoutParser

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.