Package org.openscience.cdk.interfaces

Examples of org.openscience.cdk.interfaces.IChemObject

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                                                        chemModelRelay.getRenderer().getRenderer2DModel();
                IAtom atom = chemModelRelay.getClosestAtom(worldCoord);
                IBond bond = chemModelRelay.getClosestBond(worldCoord);

                IChemObjectSelection localSelection = rModel.getSelection();
                IChemObject chemObject = getHighlighted(worldCoord, atom, bond);

                if (localSelection==null || !localSelection.contains(chemObject)) {
                        if (chemObject != null) {
                                localSelection = new SingleSelection<IChemObject>(chemObject);
                        } else {
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        super(chemModelRelay);
    }

    public void mouseClickedDown(Point2d worldCoord) {
       
        IChemObject singleSelected = getHighlighted( worldCoord,
                                                     chemModelRelay.getClosestAtom(worldCoord) );
        IAtom closestAtom;
        if(singleSelected instanceof IAtom) {
            closestAtom = (IAtom) singleSelected;
        }else {
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        start = new Point2d(worldCoord);
        IAtom closestAtom = chemModelRelay.getClosestAtom(worldCoord);
        IBond closestBond = chemModelRelay.getClosestBond( worldCoord );

        IChemObject singleSelection = getHighlighted( worldCoord,
                                                      closestAtom,
                                                      closestBond );

        if(singleSelection instanceof IAtom ) {
            source =  (IAtom) getHighlighted(worldCoord, closestAtom);
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    IAtom atom = chemModelRelay.getClosestAtom(worldCoord);
    IBond bond = chemModelRelay.getClosestBond(worldCoord);
    JChemPaintRendererModel model =
        chemModelRelay.getRenderer().getRenderer2DModel();
   
    IChemObject obj = getHighlighted( worldCoord, atom,bond );
    if(obj == null)
        unsetHighlights( model );
    else
        update(obj,model);
  }
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     * @see org.openscience.cdk.controller.ControllerModuleAdapter#mouseClickedDouble(javax.vecmath.Point2d)
     */
    public void mouseClickedDouble(Point2d p){
        IAtom closestAtom = chemModelRelay.getClosestAtom(p);
        IBond closestBond = chemModelRelay.getClosestBond(p);
        IChemObject singleSelection = getHighlighted( p,
                closestAtom,
                closestBond );
        if(singleSelection!=null){
            for (IAtomContainer isolatedSystem : ConnectivityChecker.partitionIntoMolecules(this.chemModelRelay.getIChemModel().getMoleculeSet().getAtomContainer(0)).atomContainers()) {
                if(isolatedSystem.contains(closestAtom) || isolatedSystem.contains(closestBond)){
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            bondLength=1.5;
        start = new Point2d(worldCoord);
        IAtom closestAtom = chemModelRelay.getClosestAtom(worldCoord);
        IBond closestBond = chemModelRelay.getClosestBond( worldCoord );

        IChemObject singleSelection = getHighlighted( worldCoord,
                                                      closestAtom,
                                                      closestBond );

        if(singleSelection == null || singleSelection instanceof IAtom ) {
            isBond = false;
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Related Classes of org.openscience.cdk.interfaces.IChemObject

  • org.openscience.jchempaint.action.ChangeAtomSymbolAction
  • org.openscience.jchempaint.action.ChangeBondAction
  • org.openscience.jchempaint.action.ChangeIsotopeAction
  • org.openscience.jchempaint.action.ChangeSingleElectronAction
  • org.openscience.jchempaint.action.ChangeValenceAction
  • org.openscience.jchempaint.action.ChargeAction
  • org.openscience.jchempaint.action.ConvertToPseudoAtomAction
  • org.openscience.jchempaint.action.CopyPasteAction
  • org.openscience.jchempaint.action.CreateReactionAction
  • org.openscience.jchempaint.action.EditAtomContainerPropsAction
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