Examples of org.mmisw.orrclient.gwt.client.rpc.CreateOntologyInfo

Package org.mmisw.orrclient.gwt.client.rpc

Examples of org.mmisw.orrclient.gwt.client.rpc.CreateOntologyInfo

org.mmisw.orrclient.gwt.client.rpc.CreateOntologyInfo
Info to create a new ontology entry in the registry. @author Carlos Rueda

        // Should not happen
        Window.alert(error);
        return;
      }


      CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
      createOntologyInfo.setHostingType(HostingType.FULLY_HOSTED);


      createOntologyInfo.setMetadataValues(newValues);


      OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
      dataCreationInfo.setTempOntologyInfo(getTempOntologyInfo());
      createOntologyInfo.setDataCreationInfo(dataCreationInfo);


      // set info of original ontology:
      createOntologyInfo.setBaseOntologyInfo(getTempOntologyInfo());


      // set the desired authority/shortName combination:
      createOntologyInfo.setAuthority(pageFullyHosted.getAuthority());
      createOntologyInfo.setShortName(pageFullyHosted.getShortName());


      RegisterNewExecute execute = new RegisterNewExecute(createOntologyInfo);


      execute.reviewAndRegisterNewOntology();
    }


    /////////////////////////////////////////////////////////////////////
    // Finish: re-hosted registration
    else if ( currentPage == pageReHostedConfirmation ) {


      // collect information and run the "review and register"
      String error;
      Map<String, String> newValues = new HashMap<String, String>();
      if ( (error = pageReHostedMetadataPage1.mdSection.putValuesInMap(newValues, true)) != null
      ||   (error = pageReHostedMetadataPage2.mdSection.putValuesInMap(newValues, true)) != null
      ||   (error = pageReHostedMetadataPage3.mdSection.putValuesInMap(newValues, true)) != null
      ) {
        // Should not happen
        Window.alert(error);
        return;
      }


      CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
      createOntologyInfo.setHostingType(HostingType.RE_HOSTED);


      createOntologyInfo.setMetadataValues(newValues);


      OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
      dataCreationInfo.setTempOntologyInfo(getTempOntologyInfo());
      createOntologyInfo.setDataCreationInfo(dataCreationInfo);


      // set info of original ontology:
      createOntologyInfo.setBaseOntologyInfo(getTempOntologyInfo());




      RegisterNewExecute execute = new RegisterNewExecute(createOntologyInfo);


      execute.reviewAndRegisterNewOntology();

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        Window.alert(error);
        return;
      }
      
      
      CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
      createOntologyInfo.setHostingType(HostingType.FULLY_HOSTED);
      
      createOntologyInfo.setMetadataValues(newValues);
      
      OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
      dataCreationInfo.setTempOntologyInfo(tempOntologyInfo);
      createOntologyInfo.setDataCreationInfo(dataCreationInfo);
      
      // set info of original ontology:
      createOntologyInfo.setBaseOntologyInfo(registeredOntologyInfo);
      
      createOntologyInfo.setPriorOntologyInfo(
          registeredOntologyInfo.getOntologyId(), 
          registeredOntologyInfo.getOntologyUserId(), 
          registeredOntologyInfo.getVersionNumber()
      );
      
      // set the desired authority/shortName combination:
      createOntologyInfo.setAuthority(registeredOntologyInfo.getAuthority());
      createOntologyInfo.setShortName(registeredOntologyInfo.getShortName());
      
      RegisterVersionExecute execute = new RegisterVersionExecute(createOntologyInfo);
      
      execute.reviewAndRegisterVersionOntology();
    }
    
    /////////////////////////////////////////////////////////////////////
    // Finish: re-hosted registration
    else if ( currentPage == pageReHostedConfirmation ) {
      
      // collect information and run the "review and register"
      String error;
      Map<String, String> newValues = new HashMap<String, String>();
      if ( (error = pageReHostedMetadataPage1.mdSection.putValuesInMap(newValues, true)) != null
      ||   (error = pageReHostedMetadataPage2.mdSection.putValuesInMap(newValues, true)) != null
      ||   (error = pageReHostedMetadataPage3.mdSection.putValuesInMap(newValues, true)) != null
      ) {
        // Should not happen
        Window.alert(error);
        return;
      }
      
      CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
      createOntologyInfo.setHostingType(HostingType.RE_HOSTED);
      
      createOntologyInfo.setMetadataValues(newValues);
      
      OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
      dataCreationInfo.setTempOntologyInfo(getTempOntologyInfo());
      createOntologyInfo.setDataCreationInfo(dataCreationInfo);
      
      // set info of original ontology:
      createOntologyInfo.setBaseOntologyInfo(registeredOntologyInfo);
      
      createOntologyInfo.setPriorOntologyInfo(
          registeredOntologyInfo.getOntologyId(), 
          registeredOntologyInfo.getOntologyUserId(), 
          registeredOntologyInfo.getVersionNumber()
      );
      
      // set the desired authority/shortName combination:
      createOntologyInfo.setAuthority(registeredOntologyInfo.getAuthority());
      createOntologyInfo.setShortName(registeredOntologyInfo.getShortName());
      
      RegisterVersionExecute execute = new RegisterVersionExecute(createOntologyInfo);
      
      execute.reviewAndRegisterVersionOntology();
    }

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//      String value = newValues.get(uri);
//      newValues.put(uri, value);
//    }
    
    // prepare info for creation of the ontology:
    CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
    
    // transfer info about prior ontology, if any, for eventual creation of new version:
    if ( ontologyInfo instanceof RegisteredOntologyInfo ) {
      RegisteredOntologyInfo roi = (RegisteredOntologyInfo) ontologyInfo;
      createOntologyInfo.setPriorOntologyInfo(
          roi.getOntologyId(), 
          roi.getOntologyUserId(), 
          roi.getVersionNumber()
      );
    }
    
    createOntologyInfo.setUri(ontologyInfo.getUri());
    
    if ( ontologyInfo instanceof RegisteredOntologyInfo ) {
      RegisteredOntologyInfo roi = (RegisteredOntologyInfo) ontologyInfo;
      createOntologyInfo.setAuthority(roi.getAuthority());
      createOntologyInfo.setShortName(roi.getShortName());
    }
    
    createOntologyInfo.setMetadataValues(newValues);
    


    String authority = createOntologyInfo.getAuthority();
    String shortName = createOntologyInfo.getShortName();
    
    if ( authority == null || authority.trim().length() == 0 ) {
      // TODO improve this code:
      authority = newValues.get("http://mmisw.org/ont/mmi/20081020/ontologyMetadata/origMaintainerCode");
      if ( authority == null || authority.trim().length() == 0 ) {
        authority = "mmitest";  // TODO
      }
      createOntologyInfo.setAuthority(authority);
    }
    
    if ( shortName == null || shortName.trim().length() == 0 ) {
      // TODO improve this code:
      shortName = newValues.get("http://omv.ontoware.org/2005/05/ontology#acronym");
      if ( shortName == null || shortName.trim().length() == 0 ) {
        shortName = "shorttest";  // TODO
      }
      createOntologyInfo.setShortName(shortName);
    }
    
    createOntologyInfo.setDataCreationInfo(dataCreationInfo);
    
//    if ( dataCreationInfo instanceof VocabularyDataCreationInfo
//    ||   dataCreationInfo instanceof OtherDataCreationInfo
//    ) {
//      // OK: continue
//    }
//    else {
//      Window.alert("sorry, not implemented yet");
//      return;
//    }
    
    
    final MyDialog popup = aPopup == null ? new MyDialog(null): aPopup;
    if (aPopup == null) {
      popup.addTextArea(null).setSize("600", "150");
      popup.getTextArea().setText("please wait ...");
      PortalControl.getInstance().notifyActivity(true);
      popup.center();
      popup.show();
    }
    popup.setText("Creating ontology ...");


    AsyncCallback<CreateOntologyResult> callback = new AsyncCallback<CreateOntologyResult>() {
      public void onFailure(Throwable thr) {
        PortalControl.getInstance().notifyActivity(false);
        container.clear();        
        container.add(new HTML(thr.toString()));
      }


      public void onSuccess(CreateOntologyResult result) {
        log("CreateOntologyResult obtained." + result.getCreateOntologyInfo().getHostingType());
        PortalControl.getInstance().notifyActivity(false);
        reviewCompleted(popup, result);
      }
    };


    log("Calling service createOntology, hostingType=" +createOntologyInfo.getHostingType());
    Orr.service.createOntology(createOntologyInfo, callback);
  }

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    assert loginResult.getUserId() != null;
    assert loginResult.getSessionId() != null;
    
    log.info(": registering URI: " +uri+ " ...");


    CreateOntologyInfo createOntologyInfo = createOntologyResult.getCreateOntologyInfo();


    String ontologyId = createOntologyInfo.getPriorOntologyInfo().getOntologyId();
    String ontologyUserId = createOntologyInfo.getPriorOntologyInfo().getOntologyUserId();
    
    if ( ontologyId != null ) {
      log.info("Will create a new version for ontologyId = " +ontologyId+ ", userId=" +ontologyUserId);
    }
    
    
    Map<String, String> newValues = createOntologyInfo .getMetadataValues();
    


    try {
      // this is to get the filename for the registration
      String fileName = new URL(uri).getPath();
      
      //
      // make sure the fileName ends with ".owl" as the aquaportal back-end seems
      // to add that fixed extension in some operations (at least in the parse operation)
      //
      if ( ! fileName.toLowerCase().endsWith(".owl") ) {
        if ( log.isDebugEnabled() ) {
          log.debug("register: setting file extension to .owl per aquaportal requirement.");
        }
        fileName += ".owl";
      }
      
      
      if ( ontologyId == null ) {
        //
        // Submission of a new ontology (not version of a registered one)
        //
        
        // We are about to do the actual registration. But first, re-check that there is NO a preexisting
        // ontology that may conflict with this one.
        // NOTE: this check has been done already in the review operation; however, we repeat it here
        // in case there is a new registration done by other user in the meantime. Of course, we
        // are NOT completely solving the potential concurrency problem with this re-check; we are just
        // reducing the chances of that event.
        
        
        // TODO: the following can be simplified by obtaining the unversioned form of the URI and
        // calling Util2.checkNoPreexistingOntology(unversionedUri, registerOntologyResult)


        final String namespaceRoot = newValues.get("namespaceRoot") != null 
            ? newValues.get("namespaceRoot")
            :  defaultNamespaceRoot;


        final String orgAbbreviation = createOntologyInfo.getAuthority();
        final String shortName = createOntologyInfo.getShortName();


        if ( ! Util2.checkNoPreexistingOntology(namespaceRoot, orgAbbreviation, shortName, registerOntologyResult) ) {
          return registerOntologyResult;
        }

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    assert loginResult.getUserId() != null;
    assert loginResult.getSessionId() != null;
    
    log.info(": registering ...");


    CreateOntologyInfo createOntologyInfo = createOntologyResult.getCreateOntologyInfo();


    String ontologyId = createOntologyInfo.getPriorOntologyInfo().getOntologyId();
    String ontologyUserId = createOntologyInfo.getPriorOntologyInfo().getOntologyUserId();
    
    if ( ontologyId != null ) {
      log.info("Will create a new version for ontologyId = " +ontologyId+ ", userId=" +ontologyUserId);
    }
    
    
    Map<String, String> newValues = createOntologyInfo .getMetadataValues();
    


    try {
      
      String fileName = new URL(uri).getPath();

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    assert loginResult.getUserId() != null;
    assert loginResult.getSessionId() != null;
    
    log.info(": registering ...");


    CreateOntologyInfo createOntologyInfo = createOntologyResult.getCreateOntologyInfo();


    String ontologyId = createOntologyInfo.getPriorOntologyInfo().getOntologyId();
    String ontologyUserId = createOntologyInfo.getPriorOntologyInfo().getOntologyUserId();
    
    if ( ontologyId != null ) {
      log.info("Will create a new version for ontologyId = " +ontologyId+ ", userId=" +ontologyUserId);
    }
    
    
    Map<String, String> newValues = createOntologyInfo .getMetadataValues();
    


    try {
      
      String fileName = new URL(uri).getPath();

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    if ( log.isDebugEnabled() ) {
      log.debug(getClass().getSimpleName()+ ".registerNewOntology: hostingType = " +hostingType);
    }
    
    CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
    createOntologyInfo.setHostingType(hostingType);
    createOntologyInfo.setUri(ontologyUri);
    
    setSomeValues(loginResult, createOntologyInfo);
    
    OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
    dataCreationInfo.setTempOntologyInfo(tempOntologyInfo);
    createOntologyInfo.setDataCreationInfo(dataCreationInfo);
    
    // set info of original ontology:
    createOntologyInfo.setBaseOntologyInfo(tempOntologyInfo);
    
    RegisterOntologyResult registerOntologyResult = orrClient.registerOntologyDirectly(loginResult, null, createOntologyInfo, graphId);
    if ( registerOntologyResult.getError() != null ) {
      throw new Exception("Error registering ontology: " +registerOntologyResult.getError());
    }

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      throw new Exception("User '" +loginResult.getUserName()+ "' is not allowed to " +
          "register new version for existing ontology with URI: " +ontologyUri);
    }
    
    
    CreateOntologyInfo createOntologyInfo = new CreateOntologyInfo();
    createOntologyInfo.setHostingType(hostingType);
    createOntologyInfo.setUri(ontologyUri);
    
    createOntologyInfo.setPriorOntologyInfo(
        registeredOntologyInfo.getOntologyId(), 
        registeredOntologyInfo.getOntologyUserId(), 
        registeredOntologyInfo.getVersionNumber()
    );
    
    setSomeValues(loginResult, createOntologyInfo);
    
    OtherDataCreationInfo dataCreationInfo = new OtherDataCreationInfo();
    dataCreationInfo.setTempOntologyInfo(tempOntologyInfo);
    createOntologyInfo.setDataCreationInfo(dataCreationInfo);
    
    // set info of original ontology:
    createOntologyInfo.setBaseOntologyInfo(tempOntologyInfo);
    
    RegisterOntologyResult registerOntologyResult = orrClient.registerOntologyDirectly(loginResult, registeredOntologyInfo, createOntologyInfo, graphId);
    if ( registerOntologyResult.getError() != null ) {
      throw new Exception("Error registering ontology: " +registerOntologyResult.getError());
    }

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    assert loginResult.getUserId() != null;
    assert loginResult.getSessionId() != null;
    
    log.info(": registering ...");


    CreateOntologyInfo createOntologyInfo = createOntologyResult.getCreateOntologyInfo();


    String ontologyId = createOntologyInfo.getPriorOntologyInfo().getOntologyId();
    String ontologyUserId = createOntologyInfo.getPriorOntologyInfo().getOntologyUserId();
    
    if ( ontologyId != null ) {
      log.info("Will create a new version for ontologyId = " +ontologyId+ ", userId=" +ontologyUserId);
    }
    
    
    Map<String, String> newValues = createOntologyInfo .getMetadataValues();
    


    try {
      
      String fileName = new URL(uri).getPath();

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    assert loginResult.getUserId() != null;
    assert loginResult.getSessionId() != null;
    
    log.info(": registering ...");


    CreateOntologyInfo createOntologyInfo = createOntologyResult.getCreateOntologyInfo();


    String ontologyId = createOntologyInfo.getPriorOntologyInfo().getOntologyId();
    String ontologyUserId = createOntologyInfo.getPriorOntologyInfo().getOntologyUserId();
    
    if ( ontologyId != null ) {
      log.info("Will create a new version for ontologyId = " +ontologyId+ ", userId=" +ontologyUserId);
    }
    
    
    Map<String, String> newValues = createOntologyInfo .getMetadataValues();
    


    try {
      
      String fileName = new URL(uri).getPath();

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