Examples of org.jmol.modelset.Model

      // therefore, we call it in Eval.colorObject();
      return propertyColorEncoder.getColorIndexFromPalette(atom
          .getSelectedGroupIndexWithinChain(), 0, atom
          .getSelectedGroupCountWithinChain() - 1, ColorEncoder.BGYOR, false);
    case JmolConstants.PALETTE_POLYMER:
      Model m = viewer.getModelSet().getModels()[atom.modelIndex];
      return propertyColorEncoder.getColorIndexFromPalette(atom
          .getPolymerIndexInModel(), 0, m.getBioPolymerCount() - 1,
          ColorEncoder.BGYOR, false);
    case JmolConstants.PALETTE_MONOMER:
      // viewer.calcSelectedMonomersCount() must be called first ...
      return propertyColorEncoder.getColorIndexFromPalette(atom
          .getSelectedMonomerIndexWithinPolymer(), 0, atom

                                                  boolean dsspIgnoreHydrogens,
                                                  boolean setStructure) {
    if (bioPolymerCount == 0)
      return "";


    Model m = bioPolymers[0].model;
    StringBuffer sb = new StringBuffer();
    sb.append("Jmol ").append(Viewer.getJmolVersion()).append(
        " DSSP analysis for model ").append(m.getModelNumberDotted()).append(
        " - ").append(m.getModelTitle()).append("\n");
    if (m.modelIndex == 0)
      sb.append("\nW. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637\n")
        .append(
              "\nWe thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,\n")
          .append(

Related Classes of org.jmol.modelset.Model

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.