Package org.jmol.jvxl.data

Examples of org.jmol.jvxl.data.JvxlData

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  public static String jvxlGetData(VoxelDataCreator vdc, Parameters params,
                                   VolumeData volumeData, String[] title,
                                   List surfacePointsReturn,
                                   float[] areaVolumeReturn) {
   
    JvxlData jvxlData = new JvxlData();
    new SimpleMarchingCubes(vdc, volumeData, params,
        jvxlData, surfacePointsReturn, areaVolumeReturn);
    jvxlData.isXLowToHigh = params.isXLowToHigh;
    jvxlData.cutoff = params.cutoff;
    jvxlData.isCutoffAbsolute = params.isCutoffAbsolute;
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    this.atomDataServer = atomDataServer;
    this.meshDataServer = meshDataServer;
    params = new Parameters();
    this.meshData = (meshData == null ? new MeshData() : meshData);
    //System.out.println("SurfaceGenerator setup vertexColixs =" + this.meshData.vertexColixes);
    this.jvxlData = (jvxlData == null ? new JvxlData() : jvxlData);
    volumeData = new VolumeData();
    initializeIsosurface();
  }
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    myType = "isosurface";
    newSg();
  }

  private void newSg() {
    sg = new SurfaceGenerator(viewer, this, null, jvxlData = new JvxlData());
    sg.setVersion("Jmol " + Viewer.getJmolVersion());
  }
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  private void remapColors(ColorEncoder ce) {
    float min = ce.lo;
    float max = ce.hi;
   
    JvxlData jvxlData = thisMesh.jvxlData;
    float[] vertexValues = thisMesh.vertexValues;
    short[] vertexColixes = thisMesh.vertexColixes;
    thisMesh.polygonColixes = null;
    if (vertexValues == null || jvxlData.isBicolorMap
        || jvxlData.vertexCount == 0)
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Related Classes of org.jmol.jvxl.data.JvxlData

  • org.jmol.jvxl.readers.SurfaceGenerator
  • org.jmol.shapesurface.Isosurface
  • org.openscience.jvxl.simplewriter.ASimpleJvxlWriter
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