Package org.dcm4che3.media

Examples of org.dcm4che3.media.DicomDirReader

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                ? withfmi
                : tsuid != null && !tsuid.equals(
                        fmi.getString(Tag.TransferSyntaxUID, null))) {
            fmi = dataset.createFileMetaInformation(tsuid);
        }
        @SuppressWarnings("resource")
        DicomOutputStream dos = new DicomOutputStream(
                new BufferedOutputStream(out),
                fmi != null
                        ? UID.ExplicitVRLittleEndian
                        : tsuid != null
                                ? tsuid
                                : UID.ImplicitVRLittleEndian);
        dos.setEncodingOptions(encOpts);
        dos.writeDataset(fmi, dataset);
        dos.finish();
        dos.flush();
    }
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        contentSeq.add(contentItem(valueTypeOf(inst), refSOP(cuid, iuid)));
        return true;
    }

    public void writeKOS() throws IOException {
        DicomOutputStream dos = new DicomOutputStream(
                new BufferedOutputStream(fname != null
                        ? new FileOutputStream(fname)
                        : new FileOutputStream(FileDescriptor.out)),
                nofmi ? UID.ImplicitVRLittleEndian
                      : UID.ExplicitVRLittleEndian);
        dos.setEncodingOptions(encOpts);
        try {
            dos.writeDataset(
                    nofmi ? null : kos.createFileMetaInformation(tsuid),
                    kos);
        } finally {
            dos.close();
        }
    }
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    private void storeTo(Association as, Attributes fmi,
            PDVInputStream data, File file) throws IOException  {
        LOG.info("{}: M-WRITE {}", as, file);
        file.getParentFile().mkdirs();
        DicomOutputStream out = new DicomOutputStream(file);
        try {
            out.writeFileMetaInformation(fmi);
            data.copyTo(out);
        } finally {
            SafeClose.close(out);
        }
    }
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        String cuid = cmd.getString(Tag.AffectedSOPClassUID);
        String iuid = cmd.getString(Tag.AffectedSOPInstanceUID);
        String tuid = eventInfo.getString(Tag.TransactionUID);
        File file = new File(storageDir, tuid );
        DicomOutputStream out = null;
        LOG.info("{}: M-WRITE {}", as, file);
        try {
            out = new DicomOutputStream(file);
            out.writeDataset(
                    Attributes.createFileMetaInformation(iuid, cuid,
                            UID.ExplicitVRLittleEndian),
                    eventInfo);
        } catch (IOException e) {
            LOG.warn(as + ": Failed to store Storage Commitment Result:", e);
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    }

    public void mergeJSON(String fname) throws Exception {
        if (dataset == null)
            dataset = new Attributes();
        JSONReader reader = parseJSON(fname, dataset);
        Attributes fmi2 = reader.getFileMetaInformation();
        if (fmi2 != null)
            fmi = fmi2;
    }
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    private static JSONReader parseJSON(String fname, Attributes attrs)
            throws IOException {
        @SuppressWarnings("resource")
        InputStream in = fname.equals("-") ? System.in : new FileInputStream(fname);
        try {
            JSONReader reader = new JSONReader(
                    Json.createParser(new InputStreamReader(in, "UTF-8")));
            reader.readDataset(attrs);
            return reader;
        } finally {
            if (in != System.in)
                SafeClose.close(in);
        }
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        return new File(cl.getResource(name).toURI());
    }

    @Test
    public void testInitDicomDirReader() throws Exception {
        DicomDirReader r = new DicomDirReader(toFile("DICOMDIR"));
        try {
            assertEquals("1.3.6.1.4.1.5962.1.5.1175775772.5737.0",
                    r.getFileSetUID());
            assertNull(r.getFileSetID());
            assertEquals(0, r.getFileSetConsistencyFlag());
            assertFalse(r.isEmpty());
        } finally {
            r.close();
        }
    }
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        }
    }

    @Test
    public void testReadAll() throws Exception {
        DicomDirReader r = new DicomDirReader(toFile("DICOMDIR"));
        try {
            assertEquals(44, readNext(r, r.readFirstRootDirectoryRecord()));
        } finally {
            r.close();
        }
    }
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                    fsInfo.getDescriptorFileCharset());
        ddReader = ddWriter = DicomDirWriter.open(dicomDir);
    }

    private void openDicomDirForReadOnly() throws IOException {
        ddReader = new DicomDirReader(dicomDir);
    }
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            List<InstanceLocator> list = new ArrayList<InstanceLocator>();
            String[] patIDs = keys.getStrings(Tag.PatientID);
            String[] studyIUIDs = keys.getStrings(Tag.StudyInstanceUID);
            String[] seriesIUIDs = keys.getStrings(Tag.SeriesInstanceUID);
            String[] sopIUIDs = keys.getStrings(Tag.SOPInstanceUID);
            DicomDirReader ddr = ddReader;
            Attributes patRec = ddr.findPatientRecord(patIDs);
            while (patRec != null) {
                Attributes studyRec = ddr.findStudyRecord(patRec, studyIUIDs);
                while (studyRec != null) {
                    Attributes seriesRec = ddr.findSeriesRecord(studyRec, seriesIUIDs);
                    while (seriesRec != null) {
                        Attributes instRec = ddr.findLowerInstanceRecord(seriesRec, true, sopIUIDs);
                        while (instRec != null) {
                            String cuid = instRec.getString(Tag.ReferencedSOPClassUIDInFile);
                            String iuid = instRec.getString(Tag.ReferencedSOPInstanceUIDInFile);
                            String tsuid = instRec.getString(Tag.ReferencedTransferSyntaxUIDInFile);
                            String[] fileIDs = instRec.getStrings(Tag.ReferencedFileID);
                            String uri = ddr.toFile(fileIDs).toURI().toString();
                            list.add(new InstanceLocator(cuid, iuid, tsuid, uri));
                            if (sopIUIDs != null && sopIUIDs.length == 1)
                                break;
   
                            instRec = ddr.findNextInstanceRecord(instRec, true, sopIUIDs);
                        }
                        if (seriesIUIDs != null && seriesIUIDs.length == 1)
                            break;
   
                        seriesRec = ddr.findNextSeriesRecord(seriesRec, seriesIUIDs);
                    }
                    if (studyIUIDs != null && studyIUIDs.length == 1)
                        break;
   
                    studyRec = ddr.findNextStudyRecord(studyRec, studyIUIDs);
                }
                if (patIDs != null && patIDs.length == 1)
                    break;
   
                    patRec = ddr.findNextPatientRecord(patRec, patIDs);
            }
            return list;
        } catch (IOException e) {
            throw new DicomServiceException(Status.UnableToCalculateNumberOfMatches, e);
        }
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  • org.apache.commons.cli.Options
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  • org.dcm4che3.audit.AuditMessages
  • org.dcm4che3.audit.AuditMessageTest
  • org.dcm4che3.camel.DicomConsumer$EndpointDimseRQHandlerAsyncCallback
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  • org.dcm4che3.conf.api.AttributeCoercion
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