Package org.dcm4che3.data

Examples of org.dcm4che3.data.Fragments

379
380
381
382
383
384
385
386
387
388
389
         WritableRaster destRaster =
                sm.getDataType() == raster.getSampleModel().getDataType()
                        ? raster
                        : Raster.createWritableRaster(sm, null);
        Attributes imgAttrs = metadata.getAttributes();
        StoredValue sv = StoredValue.valueOf(imgAttrs);
        LookupTableFactory lutParam = new LookupTableFactory(sv);
        DicomImageReadParam dParam = param instanceof DicomImageReadParam
                ? (DicomImageReadParam) param
                : new DicomImageReadParam();
        Attributes psAttrs = dParam.getPresentationState();
View Full Code Here
491
492
493
494
495
496
497
498
499
500
501
                        : ByteOrder.LITTLE_ENDIAN);
                this.frameLength = pmi.frameLength(width, height, samples, bitsAllocated);
                this.pixeldata = (BulkData) pixeldata;
            } else {
                String tsuid = dis.getTransferSyntax();
                ImageReaderParam param =
                        ImageReaderFactory.getImageReaderParam(tsuid);
                if (param == null)
                    throw new IOException("Unsupported Transfer Syntax: " + tsuid);
                this.decompressor = ImageReaderFactory.getImageReader(param);
                this.patchJpegLS = param.patchJPEGLS;
View Full Code Here
333
334
335
336
337
338
339
340
    private ImageInputStreamImpl iisOfFrame(int frameIndex)
            throws IOException {
        SegmentedInputImageStream siis = new SegmentedInputImageStream(
                iis, pixeldataFragments, frameIndex);
        return patchJpegLS != null
                ? new PatchJPEGLSImageInputStream(siis, patchJpegLS)
                : siis;
    }
View Full Code Here
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
        imageReader.setInput(iis);
        return imageReader.read(frame-1, readParam());
    }

    private ImageReadParam readParam() {
        DicomImageReadParam param =
                (DicomImageReadParam) imageReader.getDefaultReadParam();
        param.setWindowCenter(windowCenter);
        param.setWindowWidth(windowWidth);
        param.setAutoWindowing(autoWindowing);
        param.setWindowIndex(windowIndex);
        param.setVOILUTIndex(voiLUTIndex);
        param.setPreferWindow(preferWindow);
        param.setPresentationState(prState);
        param.setOverlayActivationMask(overlayActivationMask);
        param.setOverlayGrayscaleValue(overlayGrayscaleValue);
        return param;
    }
View Full Code Here
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
            main.setEncodingOptions(CLIUtils.encodingOptionsOf(cl));
            try {
                if (cl.hasOption("i")) {
                    String fname = cl.getOptionValue("i");
                    if (fname.equals("-")) {
                        main.parse(new DicomInputStream(System.in));
                    } else {
                        DicomInputStream dis =
                                new DicomInputStream(new File(fname));
                        try {
                            main.parse(dis);
                        } finally {
                            dis.close();
                        }
                    }
                }

                if (cl.hasOption("j"))
View Full Code Here
149
150
151
152
153
154
155
156
157
158
159
160
161
        if (!from.renameTo(dest))
            throw new IOException("Failed to rename " + from + " to " + dest);
    }

    private static Attributes parse(File file) throws IOException {
        DicomInputStream in = new DicomInputStream(file);
        try {
            in.setIncludeBulkData(IncludeBulkData.NO);
            return in.readDataset(-1, Tag.PixelData);
        } finally {
            SafeClose.close(in);
        }
    }
View Full Code Here
409
410
411
412
413
414
415
416
417
418
419
420
    }

    private static Attributes loadDicomObject(File f) throws IOException {
        if (f == null)
            return null;
        DicomInputStream dis = new DicomInputStream(f);
        try {
            return dis.readDataset(-1, -1);
        } finally {
            SafeClose.close(dis);
        }
    }
View Full Code Here
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
    }

    public void validate(File file) {
        if (iod == null)
            throw new IllegalStateException("IOD net initialized");
        DicomInputStream dis = null;
        try {
            System.out.print("Validate: " + file + " ... ");
            dis = new DicomInputStream(file);
            Attributes attrs = dis.readDataset(-1, -1);
            ValidationResult result = attrs.validate(iod);
            if (result.isValid())
                System.out.println("OK");
            else {
                System.out.println("FAILED:");
View Full Code Here
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
                ? withfmi
                : tsuid != null && !tsuid.equals(
                        fmi.getString(Tag.TransferSyntaxUID, null))) {
            fmi = dataset.createFileMetaInformation(tsuid);
        }
        @SuppressWarnings("resource")
        DicomOutputStream dos = new DicomOutputStream(
                new BufferedOutputStream(out),
                fmi != null
                        ? UID.ExplicitVRLittleEndian
                        : tsuid != null
                                ? tsuid
                                : UID.ImplicitVRLittleEndian);
        dos.setEncodingOptions(encOpts);
        dos.writeDataset(fmi, dataset);
        dos.finish();
        dos.flush();
    }
View Full Code Here
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
        contentSeq.add(contentItem(valueTypeOf(inst), refSOP(cuid, iuid)));
        return true;
    }

    public void writeKOS() throws IOException {
        DicomOutputStream dos = new DicomOutputStream(
                new BufferedOutputStream(fname != null
                        ? new FileOutputStream(fname)
                        : new FileOutputStream(FileDescriptor.out)),
                nofmi ? UID.ImplicitVRLittleEndian
                      : UID.ExplicitVRLittleEndian);
        dos.setEncodingOptions(encOpts);
        try {
            dos.writeDataset(
                    nofmi ? null : kos.createFileMetaInformation(tsuid),
                    kos);
        } finally {
            dos.close();
        }
    }
View Full Code Here
TOP

Related Classes of org.dcm4che3.data.Fragments

  • org.apache.camel.Exchange
  • org.apache.commons.cli.CommandLine
  • org.apache.commons.cli.OptionGroup
  • org.apache.commons.cli.Options
  • org.dcm4che3.audit.AuditMessage
  • org.dcm4che3.audit.AuditMessages
  • org.dcm4che3.audit.AuditMessageTest
  • org.dcm4che3.camel.DicomConsumer$EndpointDimseRQHandlerAsyncCallback
  • org.dcm4che3.camel.test.EchoSCP
  • org.dcm4che3.conf.api.AttributeCoercion
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.