Package org.dcm4che3.conf.prefs

Examples of org.dcm4che3.conf.prefs.PreferencesDicomConfiguration


                LOG.error("Configuration backend error - {}", e);
            }
        } else {

            try {
                PreferencesDicomConfiguration conf = new PreferencesDicomConfiguration();
                LOG.info("Started Loading LDAP configuration");
                ApplicationEntity sourceAE = conf
                        .findApplicationEntity(instance.sourceAET);
                ArrayList<TransferCapability> tcs = (ArrayList<TransferCapability>) sourceAE
                        .getTransferCapabilities();
                ArrayList<PresentationContext> pcs = addChunkedPCsandSend(ae,
                        device, instance, tcs);
                // print accepted ones
                ArrayList<PresentationContext> acceptedPCs = new ArrayList<PresentationContext>();
                for (PresentationContext pc : pcs)
                    if (pc.isAccepted())
                        acceptedPCs.add(pc);

                ApplicationEntity destinationAE = conf
                        .findApplicationEntity(instance.destinationAET);
                Device toStore = destinationAE.getDevice();
                TransferCapability[] TCs = mergeTCs(acceptedPCs);
                for (TransferCapability tc : TCs)
                    toStore.getApplicationEntity(instance.destinationAET)
                            .addTransferCapability(tc);

                conf.merge(toStore);
                conf.close();
                return;
            } catch (ConfigurationException e) {
                LOG.error("Configuration backend error - {}", e);
            }
        }
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                    LOG.error("Configuration backend error - {}", e);
                }
            } else if (cl.hasOption("prefs")) {
                // prefs
                try {
                    PreferencesDicomConfiguration conf = new PreferencesDicomConfiguration();
                    LOG.info("Started Loading LDAP configuration");
                    ArrayList<TransferCapability> tcs = null;
                    if(cl.hasOption("s")){
                    ApplicationEntity sourceAE = conf
                            .findApplicationEntity(instance.sourceAET);
                    tcs = (ArrayList<TransferCapability>) sourceAE
                            .getTransferCapabilities();
                    }
                    else
                    {
                        tcs = loadTCFile();
                    }
                    ArrayList<PresentationContext> pcs = addChunkedPCsandSend(
                            ae, device, instance, tcs);
                    // print accepted ones
                    ArrayList<PresentationContext> acceptedPCs = new ArrayList<PresentationContext>();
                    for (PresentationContext pc : pcs)
                        if (pc.isAccepted())
                            acceptedPCs.add(pc);

                    LOG.info("Probed the source ae and found the following accepted presentation contexts");
                    for (PresentationContext pc : acceptedPCs) {
                        LOG.info("PC[" + pc.getPCID() + "]\tAbstractSyntax:"
                                + pc.getAbstractSyntax() + "\n with "
                                + " the following Transfer-Syntax:["
                                + pc.getTransferSyntax() + "]");

                    }
                    LOG.info("finished probing TCs");
                    if(instance.destinationAET!=null){
                    LOG.info("Adding Accepted TCs to configuration backend");
                    ApplicationEntity destinationAE = conf
                            .findApplicationEntity(instance.destinationAET);
                   
                    Device toStore = destinationAE.getDevice();
                    TransferCapability[] TCs = mergeTCs(acceptedPCs);
                    for (TransferCapability tc : TCs)
                        toStore.getApplicationEntity(instance.destinationAET)
                                .addTransferCapability(tc);

                    conf.merge(toStore);
                    logAddedTCs(TCs, destinationAE);
                    conf.close();
                    }
                    System.exit(1);
                } catch (ConfigurationException e) {
                    LOG.error("Configuration backend error - {}", e);
                }
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        String codeMeaning = codes.getProperty(codeValue);
        if (codeMeaning == null)
            throw new IllegalArgumentException("undefined code value: "
                        + codeValue);
        int endDesignator = codeValue.indexOf('-');
        Attributes attrs = new Attributes(3);
        attrs.setString(Tag.CodeValue, VR.SH,
                endDesignator >= 0
                    ? codeValue.substring(endDesignator + 1)
                    : codeValue);
        attrs.setString(Tag.CodingSchemeDesignator, VR.SH,
                endDesignator >= 0
                    ? codeValue.substring(0, endDesignator)
                    : "DCM");
        attrs.setString(Tag.CodeMeaning, VR.LO, codeMeaning);
        return attrs;
    }
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        bulkDataFiles = dis.getBulkDataFiles();
    }

    public void mergeJSON(String fname) throws Exception {
        if (dataset == null)
            dataset = new Attributes();
        JSONReader reader = parseJSON(fname, dataset);
        Attributes fmi2 = reader.getFileMetaInformation();
        if (fmi2 != null)
            fmi = fmi2;
    }
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            dos.close();
        }
    }

    private Sequence refSOPSeq(String studyIUID, String seriesIUID) {
        Attributes refStudy = getOrAddItem(evidenceSeq, Tag.StudyInstanceUID, studyIUID);
        Sequence refSeriesSeq = refStudy.ensureSequence(Tag.ReferencedSeriesSequence, 10);
        Attributes refSeries = getOrAddItem(refSeriesSeq,Tag.SeriesInstanceUID, seriesIUID);
        return refSeries.ensureSequence(Tag.ReferencedSOPSequence, 100);
    }
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        if (fmi2 != null)
            fmi = fmi2;
    }

    public static Attributes parseJSON(String fname) throws Exception {
        Attributes attrs = new Attributes();
        parseJSON(fname, attrs);
        return attrs;
    }
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    private Attributes getOrAddItem(Sequence seq, int tag, String value) {
        for (Attributes item : seq)
            if (value.equals(item.getString(tag)))
                return item;
       
        Attributes item = new Attributes(2);
        item.setString(tag, VR.UI, value);
        seq.add(item);
        return item;
    }
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                      : inst.contains(Tag.WaveformSequence) ? "WAVEFORM"
                                                            : "COMPOSITE";
    }

    private Attributes refSOP(String cuid, String iuid) {
        Attributes item = new Attributes(2);
        item.setString(Tag.ReferencedSOPClassUID, VR.UI, cuid);
        item.setString(Tag.ReferencedSOPInstanceUID, VR.UI, iuid);
        return item;
    }
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        item.setString(Tag.ReferencedSOPInstanceUID, VR.UI, iuid);
        return item;
    }

    private Attributes createKOS(Attributes inst) {
        Attributes attrs = new Attributes(inst, PATIENT_AND_STUDY_ATTRS);
        attrs.setString(Tag.SOPClassUID, VR.UI, UID.KeyObjectSelectionDocumentStorage);
        attrs.setString(Tag.SOPInstanceUID, VR.UI, UIDUtils.createUID());
        attrs.setDate(Tag.ContentDateAndTime, new Date());
        attrs.setString(Tag.Modality, VR.CS, "KO");
        attrs.setNull(Tag.ReferencedPerformedProcedureStepSequence, VR.SQ);
        attrs.setString(Tag.SeriesInstanceUID, VR.UI, UIDUtils.createUID());
        attrs.setString(Tag.SeriesNumber, VR.IS, seriesNumber);
        attrs.setString(Tag.InstanceNumber, VR.IS, instanceNumber);
        attrs.setString(Tag.ValueType, VR.CS, "CONTAINER");
        attrs.setString(Tag.ContinuityOfContent, VR.CS, "SEPARATE");
        attrs.newSequence(Tag.ConceptNameCodeSequence, 1).add(documentTitle);
        evidenceSeq = attrs.newSequence(Tag.CurrentRequestedProcedureEvidenceSequence, 1);
        attrs.newSequence(Tag.ContentTemplateSequence, 1).add(templateIdentifier());
        contentSeq = attrs.newSequence(Tag.ContentSequence, 1);
        if (documentTitleModifier != null)
            contentSeq.add(documentTitleModifier());
        if (keyObjectDescription != null)
            contentSeq.add(keyObjectDescription());
        return attrs;
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            contentSeq.add(keyObjectDescription());
        return attrs;
    }

    private Attributes templateIdentifier() {
        Attributes attrs = new Attributes(2);
        attrs.setString(Tag.MappingResource, VR.CS, "DCMR");
        attrs.setString(Tag.TemplateIdentifier, VR.CS, "2010");
        return attrs ;
    }
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