Package org.data2semantics.proppred.kernels.rdfgraphkernels

Examples of org.data2semantics.proppred.kernels.rdfgraphkernels.RDFIntersectionSubTreeKernel

245
246
247
248
249
250
251
252
253
254
255
        LibSVMParameters svmParms = new LibSVMParameters(LibSVMParameters.C_SVC, cs);
        svmParms.setNumFolds(5);


        KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true), seeds2, svmParms, dataset, instances, labels, blackList);

        System.out.println("Running IST: " + i);
        exp.run();
        res.add(exp.getResults());
      }
View Full Code Here
165
166
167
168
169
170
171
172
173
174
175
   
    for (int d : depths) {
      resTable.newRow("IST, depth="+d);

      RDFOldKernelExperiment exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(d, 1, inference, true), seeds, svmParms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + d);
      exp.run();

      for (Result res : exp.getResults()) {
View Full Code Here
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
   
     
      comp = new double[seeds.length];
      for (int i = 0; i < seeds.length; i++) {
        createGeoDataSet((int)(1000 * frac), frac, seeds[i], "http://data.bgs.ac.uk/ref/Lexicon/hasTheme");   
        RDFGraphKernel k = new RDFIntersectionSubTreeKernel(3,1, false, true);


        System.out.println("RDF IST: " + frac);
        tic = System.currentTimeMillis();
        k.compute(dataset, instances, blackList);
        toc = System.currentTimeMillis();
        comp[i] = toc-tic;
      }
      res = new Result(comp, "RDF IST");
      resTable.addResult(res);
View Full Code Here
117
118
119
120
121
122
123
124
125
126
127
    }
    System.out.println(resTable);
   
    for (int depth : depths) {
      resTable.newRow("IST, depth="+depth);
      RDFOldKernelExperiment exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(depth, 1, inference, true), seeds, svmParms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + depth);
      exp.run();

      for (Result res : exp.getResults()) {
View Full Code Here
100
101
102
103
104
105
106
107
108
109
110
      res.setLabel("runtime");
      for (long seed : seeds) {

        createAffiliationPredictionDataSet(frac, seed);

        KernelExperiment<RDFGraphKernel> exp = new RDFKernelRunTimeExperiment(new RDFIntersectionSubTreeKernel(depth, 1, inference, true, false), seeds, parms, dataset, instances, labels, blackList);

        System.out.println("Running IST: " + frac);
        exp.run();
        res.addResult(exp.getResults().get(0));
      }
View Full Code Here
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283

    inference = false;
    for (int i = 1; i <= depth; i++) {
      resTable.newRow("IST, no inference, depth=" + i);
      KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, blankLabels), seeds, parms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + i + " ");
      exp.run();

      for (Result res : exp.getResults()) {
        resTable.addResult(res);
      }
    }
    saveResults(resTable, "affiliation.ser");

    inference = true;
    for (int i = 1; i <= depth; i++) {
      resTable.newRow("IST, inference, depth=" + i);
      KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, blankLabels), seeds, parms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + i + " ");
      exp.run();

      for (Result res : exp.getResults()) {
View Full Code Here
103
104
105
106
107
108
109
110
111
112
113
      Result res = new Result();
      res.setLabel("runtime");
      for (long seed : seeds) {
        createGeoDataSet(seed,frac,6,"http://data.bgs.ac.uk/ref/Lexicon/hasLithogenesis");

        KernelExperiment<RDFGraphKernel> exp = new RDFKernelRunTimeExperiment(new RDFIntersectionSubTreeKernel(depth, 1, inference, true, false), seeds, parms, dataset, instances, labels, blackList);

        System.out.println("Running IST: " + frac);
        exp.run();
        res.addResult(exp.getResults().get(0));
      }
View Full Code Here
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
      List<List<Result>> res = new ArrayList<List<Result>>();
      for (long seed : seeds) {
        long[] s2 = new long[1];
        s2[0] = seed;
        createGeoDataSet(seed, fraction,  minSize, "http://data.bgs.ac.uk/ref/Lexicon/hasTheme");
        KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, false), s2, parms, dataset, instances, labels, blackList);
        res.add(exp.getResults());

        System.out.println("Running IST: " + i);
        if (experimenter.hasSpace()) {
          experimenter.addExperiment(exp);
        }
      }

      experimenter.stop();

      while (expT.isAlive()) {
        try {
          Thread.sleep(1000);
        } catch (Exception e) {
          e.printStackTrace();
        }
      }

      for (Result res2 : Result.mergeResultLists(res)) {
        resTable.addResult(res2);
      }
    }
    saveResults(resTable, "geo_theme.ser");


    inference = true;
    for (int i = 1; i <= depth; i++) {
      resTable.newRow("IST, inference, depth="+i);

      Experimenter experimenter = new Experimenter(2);
      Thread expT = new Thread(experimenter);
      expT.setDaemon(true);
      expT.start();

      List<List<Result>> res = new ArrayList<List<Result>>();
      for (long seed : seeds) {
        long[] s2 = new long[1];
        s2[0] = seed;
        createGeoDataSet(seed, fraction,  minSize, "http://data.bgs.ac.uk/ref/Lexicon/hasTheme");
        KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, false), s2, parms, dataset, instances, labels, blackList);
        res.add(exp.getResults());


        System.out.println("Running IST: " + i);
        if (experimenter.hasSpace()) {
View Full Code Here
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559

    inference = false;
    for (int i = 1; i <= depth; i++) {
      resTable.newRow("IST, no inference, depth="+i);
      KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, blankLabels), seeds, parms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + i + " ");
      exp.run();

      for (Result res : exp.getResults()) {
        resTable.addResult(res);
      }
    }
    saveResults(resTable, "geo_litho.ser");

    inference = true;
    for (int i = 1; i <= depth; i++) {
      resTable.newRow("IST, inference, depth="+i);
      KernelExperiment<RDFGraphKernel> exp = new RDFOldKernelExperiment(new RDFIntersectionSubTreeKernel(i, 1, inference, true, blankLabels), seeds, parms, dataset, instances, labels, blackList);

      System.out.println("Running IST: " + i + " ");
      exp.run();

      for (Result res : exp.getResults()) {
View Full Code Here
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
    //*/

    ///*
    for (int i : depths) {     
      resTable.newRow("RDF IST, " + i);
      RDFIntersectionSubTreeKernel k = new RDFIntersectionSubTreeKernel(i, 1, inference, true);
     
      KernelExperiment<RDFGraphKernel> exp = new RDFGraphKernelExperiment(k, seeds, svmParms, dataset, instances, target, blackList, evalFuncs);

      System.out.println("Running RDF IST: " + i);
      exp.run();

      for (Result res : exp.getResults()) {
        resTable.addResult(res);
      } 
    }
    System.out.println(resTable);
    //*/

    ///*
    for (int i : depths) {     
      resTable.newRow("RDF IST TYPE, " + i);
      RDFIntersectionSubTreeSlashBurnKernel k = new RDFIntersectionSubTreeSlashBurnKernel(i, 1, inference, true);
      k.setHubMap(GraphUtils.createRDFTypeHubMap(dataset, inference));

      KernelExperiment<RDFGraphKernel> exp = new RDFGraphKernelExperiment(k, seeds, svmParms, dataset, instances, target, blackList, evalFuncs);

      System.out.println("Running RDF IST TYPE: " + i);
      exp.run();

      for (Result res : exp.getResults()) {
        resTable.addResult(res);
      } 
    }
    System.out.println(resTable);
    //*/


    ///*
    for (int h : hf) {
      for (int i : depths) {     
        resTable.newRow("RDF IST Regular Degree, " + h + ", " + i);
        RDFIntersectionSubTreeSlashBurnKernel k = new RDFIntersectionSubTreeSlashBurnKernel(i, 1, inference, true);
        k.setHubMap(GraphUtils.createNonSigHubMap(nonSigDegreeHubs, h));

        KernelExperiment<RDFGraphKernel> exp = new RDFGraphKernelExperiment(k, seeds, svmParms, dataset, instances, target, blackList, evalFuncs);

        System.out.println("Running RDF IST Regular Degree: " + i + " " + h);
        exp.run();

        for (Result res : exp.getResults()) {
          resTable.addResult(res);
        } 
      }
    }
    System.out.println(resTable);
    //*/


    ///*
    for (int h : hf) {
      for (int i : depths) {     
        resTable.newRow("RDF IST Signature Degree (SB), " + h + ", " + i);
        RDFIntersectionSubTreeSlashBurnKernel k = new RDFIntersectionSubTreeSlashBurnKernel(i, 1, inference, true);
        k.setHubMap(GraphUtils.createHubMap(hubs, h));

        KernelExperiment<RDFGraphKernel> exp = new RDFGraphKernelExperiment(k, seeds, svmParms, dataset, instances, target, blackList, evalFuncs);

        System.out.println("Running RDF IST Signature Degree (SB): " + i + " " + h);
        exp.run();
View Full Code Here
TOP

Related Classes of org.data2semantics.proppred.kernels.rdfgraphkernels.RDFIntersectionSubTreeKernel

  • org.data2semantics.exp.AffiliationExperiment
  • org.data2semantics.exp.dmold.DMoLDGeoExperiment
  • org.data2semantics.exp.dmold.DMoLDRunningTimeExperiment
  • org.data2semantics.exp.dmold.DMoLDTask2Experiment
  • org.data2semantics.exp.dmold.DMoLDThemeExperiment
  • org.data2semantics.exp.ecml2013.AffiliationCompareExperiment
  • org.data2semantics.exp.ecml2013.GeoCompareExperiment
  • org.data2semantics.exp.FullClassExperiment
  • org.data2semantics.exp.FullClassRunningTimeExperiment
  • org.data2semantics.exp.FullThemeRunningTimeExperiment
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.