Package org.codehaus.staxmate.out

Examples of org.codehaus.staxmate.out.SMOutputElement

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  //START SNIPPET: serialize

  @Override
  public void serialize( SMOutputElement serializeTo, Car object ) throws IOException, XMLStreamException {
    SMOutputElement colorElement = serializeTo.addElement( serializeTo.getNamespace(), "color" );  //okay, should be a own serializer in real world...
    colorElement.addAttribute( "red", String.valueOf( object.getColor().getRed() ) );
    colorElement.addAttribute( "blue", String.valueOf( object.getColor().getBlue() ) );
    colorElement.addAttribute( "green", String.valueOf( object.getColor().getGreen() ) );

    serialize( object.getModel(), Model.class, serializeTo.addElement( serializeTo.getNamespace(), "model" ) );
    serialize( object.getBasePrice(), Money.class, serializeTo.addElement( serializeTo.getNamespace(), "basePrice" ) );

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      SMOutputDocument doc = StaxMateSupport.getSmOutputFactory().createOutputDocument( out );

      String nameSpaceUri = getNameSpace();
      SMNamespace nameSpace = doc.getNamespace( nameSpaceUri );

      SMOutputElement root = doc.addElement( nameSpace, getDefaultElementName() );
      serialize( root, object, getFormatVersion() );
      doc.closeRoot();
    } catch ( XMLStreamException e ) {
      throw new IOException( e );
    }
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  protected <T> void serializeCollection( @Nonnull Iterable<? extends T> objects, @Nonnull Class<T> type, @Nonnull String elementName, @Nonnull SMOutputElement serializeTo, @Nonnull Version formatVersion ) throws XMLStreamException, IOException {
    AbstractXmlSerializer<? super T, SMOutputElement, XMLStreamReader, XMLStreamException> serializer = getSerializer( type );
    Version resolvedVersion = getDelegatesMappings().resolveVersion( type, formatVersion );

    for ( T object : objects ) {
      SMOutputElement doorElement = serializeTo.addElement( serializeTo.getNamespace(), elementName );
      serializer.serialize( doorElement, object, resolvedVersion );
    }
  }
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  protected <T> void serializeCollection( @Nonnull Iterable<? extends T> objects, @Nonnull Class<T> type, @Nonnull SMOutputElement serializeTo, @Nonnull Version formatVersion ) throws XMLStreamException, IOException {
    AbstractXmlSerializer<? super T, SMOutputElement, XMLStreamReader, XMLStreamException> serializer = getSerializer( type );
    Version resolvedVersion = getDelegatesMappings().resolveVersion( type, formatVersion );

    for ( T object : objects ) {
      SMOutputElement doorElement = serializeTo.addElement( serializeTo.getNamespace(), serializer.getDefaultElementName() );
      serializer.serialize( doorElement, object, resolvedVersion );
    }
  }
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   * @param serializeTo           the object the elements are serialized to
   * @param formatVersion         the format version
   * @throws IOException
   */
  protected <T> void serializeCollectionToElement( @Nonnull Iterable<? extends T> objects, @Nonnull Class<T> type, @Nonnull String collectionElementName, @Nonnull String elementName, @Nonnull SMOutputElement serializeTo, Version formatVersion ) throws XMLStreamException, IOException {
    SMOutputElement collectionElement = serializeTo.addElement( serializeTo.getNamespace(), collectionElementName );
    serializeCollection( objects, type, elementName, collectionElement, formatVersion );
  }
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    SMOutputElement collectionElement = serializeTo.addElement( serializeTo.getNamespace(), collectionElementName );
    serializeCollection( objects, type, elementName, collectionElement, formatVersion );
  }

  protected <T> void serializeCollectionToElement( @Nonnull Iterable<? extends T> objects, @Nonnull Class<T> type, @Nonnull String collectionElementName, @Nonnull SMOutputElement serializeTo, Version formatVersion ) throws XMLStreamException, IOException {
    SMOutputElement collectionElement = serializeTo.addElement( serializeTo.getNamespace(), collectionElementName );
    serializeCollection( objects, type, collectionElement, formatVersion );
  }
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  //START SNIPPET: serialize

  @Override
  public void serialize( SMOutputElement serializeTo, Car object ) throws IOException, XMLStreamException {
    SMOutputElement colorElement = serializeTo.addElement( serializeTo.getNamespace(), "color" );  //okay, should be a own serializer in real world...
    colorElement.addAttribute( "red", String.valueOf( object.getColor().getRed() ) );
    colorElement.addAttribute( "blue", String.valueOf( object.getColor().getBlue() ) );
    colorElement.addAttribute( "green", String.valueOf( object.getColor().getGreen() ) );

    serialize( object.getModel(), Model.class, serializeTo.addElement( serializeTo.getNamespace(), "model" ) );
    serialize( object.getBasePrice(), Money.class, serializeTo.addElement( serializeTo.getNamespace(), "basePrice" ) );

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              && (programVersion.length() > 0) ? programVersion
              : "?", date, JSBML.getJSBMLDottedVersion()));
      outputDocument.addCharacters("\n");
    }

    SMOutputElement smOutputElement = outputDocument.addElement(namespace,
        sbmlDocument.getElementName());

    SBMLObjectForXML xmlObject = new SBMLObjectForXML();
    xmlObject.setName(sbmlDocument.getElementName());
    xmlObject.setNamespace(SBMLNamespace);
    xmlObject.addAttributes(sbmlDocument.writeXMLAttributes());

    // register all the name spaces of the SBMLDocument to the writer
    Iterator<Map.Entry<String, String>> it = sbmlDocument
        .getSBMLDocumentNamespaces().entrySet().iterator();

    logger.debug(" SBML name spaces size = "
        + sbmlDocument.getSBMLDocumentNamespaces().size());

    while (it.hasNext()) {
      Map.Entry<String, String> entry = it.next();
      if (!entry.getKey().equals("xmlns")) {

        logger.debug(" SBML name spaces : " + entry.getKey() + " = "
            + entry.getValue());

        String namespacePrefix = entry.getKey().substring(
            entry.getKey().indexOf(":") + 1);
        streamWriter.setPrefix(namespacePrefix, entry.getValue());

        logger.debug(" SBML namespaces : " + namespacePrefix + " = "
            + entry.getValue());

      }
    }

    it = xmlObject.getAttributes().entrySet().iterator();
    while (it.hasNext()) {
      Entry<String, String> entry = it.next();
      smOutputElement.addAttribute(entry.getKey(), entry.getValue());
    }

    int indent = indentCount;
    if (sbmlDocument.isSetNotes()) {
      writeNotes(sbmlDocument, smOutputElement, streamWriter,
          SBMLNamespace, indent);
    }
    if (sbmlDocument.isSetAnnotation()) {
      writeAnnotation(sbmlDocument, smOutputElement, streamWriter,
          indent, false);
    }
    smOutputElement.addCharacters("\n");

    writeSBMLElements(xmlObject, smOutputElement, streamWriter,
        sbmlDocument, indent);

    outputDocument.closeRoot();
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    String sbmlNamespace = JSBML.getNamespaceFrom(sbase.getLevel(), sbase.getVersion());
    SMNamespace namespace = element.getContext().getNamespace(sbmlNamespace);

    namespace.setPreferredPrefix("");
    Annotation annotation = sbase.getAnnotation();
    SMOutputElement annotationElement;
    String whiteSpaces = createIndentationString(indent);
   
    if (xmlFragment) {
      annotationElement = element.addElement("annotation");
    } else {
      element.addCharacters("\n");
      element.setIndentation(whiteSpaces, indent, indentCount);   
      annotationElement = element.addElement(namespace, "annotation");
    }
    annotationElement.setIndentation(whiteSpaces, indent, indentCount);

    if ((annotation.getNonRDFannotation() != null)
        && (annotation.getNonRDFannotation().length() > 0)) {
      StringBuffer annotationBeginning = StringTools.concat(whiteSpaces,
          "<annotation");

      // Adding the name spaces of the annotation element
      Map<String, String> otherNamespaces = annotation
          .getAnnotationNamespaces();

      for (String namespacePrefix : otherNamespaces.keySet()) {
        StringTools.append(annotationBeginning, " ", namespacePrefix,
            "=\"", otherNamespaces.get(namespacePrefix), "\"");
        annotationElement.addAttribute(namespacePrefix, otherNamespaces.get(namespacePrefix));
      }
           
      boolean allNamespacesDefined = true;
     
      // Adding the name spaces of the sbml element
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      // set the indentation for the math opening tag     
      element.setIndentation(whitespaces, indent + indentCount, indentCount);

      // Creating an SMOutputElement to be sure that the previous nested element tag is closed properly.
      SMNamespace mathMLNamespace = element.getNamespace(ASTNode.URI_MATHML_DEFINITION, ASTNode.URI_MATHML_PREFIX);
      SMOutputElement mathElement = element.addElement(mathMLNamespace, "math");
      MathMLXMLStreamCompiler compiler = new MathMLXMLStreamCompiler(
          writer, createIndentationString(indent + indentCount));
      boolean isSBMLNamespaceNeeded = compiler.isSBMLNamespaceNeeded(m.getMath());

      // TODO : add all other namespaces !!

      if (isSBMLNamespaceNeeded) {
        // writing the SBML namespace
        SBMLDocument doc = null;
        SBase sbase = m.getMath().getParentSBMLObject();
        String sbmlNamespace = SBMLDocument.URI_NAMESPACE_L3V1Core;
       
        if (sbase != null) {
          doc = sbase.getSBMLDocument();
          sbmlNamespace = doc.getSBMLDocumentNamespaces().get("xmlns");
         
          if (sbmlNamespace == null) {
            logger.warn("writeMathML : the SBML namespace of this SBMLDocument" +
                " could not be found, using the default namespace (" +
                SBMLDocument.URI_NAMESPACE_L3V1Core + ") instead.");
            sbmlNamespace = SBMLDocument.URI_NAMESPACE_L3V1Core;
          }
        }
        writer.writeNamespace("sbml", sbmlNamespace);
      }
     
      mathElement.setIndentation(createIndentationString(indent + 2), indent + indentCount, indentCount);
     
      writer.writeCharacters(whitespaces);
      writer.writeCharacters("\n");

      compiler.compile(m.getMath());
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Related Classes of org.codehaus.staxmate.out.SMOutputElement

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