Package org.broad.igv.ui

Examples of org.broad.igv.ui.Main$Version

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  }


  public String getWGAVersionString() {
    String wgaVersion = "n.a.";
    Version version = getWGAVersion();
    if (version != null) {
      wgaVersion = version.getMainVersionString();
    }
    return wgaVersion;
  }
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    return null;
  }
 
 
  public static String determineWGAVersion(InputStream wgabuildProperties, String delimiter, boolean includeMinorVersion, boolean includeMaintenanceVersion) throws IOException {
    Version versionObj = determineWGAVersion(wgabuildProperties);     
    StringBuffer version = new StringBuffer();
    version.append(versionObj.getMajorVersion());
    if (includeMinorVersion) {
      version.append(delimiter);
      version.append(versionObj.getMinorVersion());
    }
    if (includeMaintenanceVersion) {
      version.append(delimiter);
      version.append(versionObj.getMaintenanceVersion());
    }
    return version.toString();
  }
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  }
 
  public static Version determineWGAVersion(InputStream wgabuildProperties) throws IOException {
    Properties props = new Properties();
    props.load(wgabuildProperties);
    Version version = new Version();
    if (props.getProperty("majorVersion") != null) {
      version.setMajorVersion(Integer.parseInt(props.getProperty("majorVersion")));
    }
    if (props.getProperty("minorVersion") != null) {
      version.setMinorVersion(Integer.parseInt(props.getProperty("minorVersion")));
    }
    if (props.getProperty("maintenanceVersion") != null) {
      version.setMaintenanceVersion(Integer.parseInt(props.getProperty("maintenanceVersion")));
    }
    if (props.getProperty("patchVersion") != null) {
      version.setPatchVersion(Integer.parseInt(props.getProperty("patchVersion")));
    }
    if (props.getProperty("buildVersion") != null) {
      version.setBuildVersion(Integer.parseInt(props.getProperty("buildVersion")));
    }
    return version;
  }
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  public Version determineWGAVersion() throws IOException, ClassNotFoundException, IllegalArgumentException, SecurityException, IllegalAccessException, NoSuchFieldException {
    File classesDir = new File(getDeployDir(), "WEB-INF/classes");
    URLClassLoader loader = new URLClassLoader(new URL[] {classesDir.toURL()}, this.getClass().getClassLoader());
    Class wgaVersionClass = loader.loadClass("de.innovationgate.wgpublisher.WGAVersion");
    Version version = new Version();
    version.setMajorVersion(wgaVersionClass.getDeclaredField("WGAPUBLISHER_MAJOR_VERSION").getInt(null));
    version.setMinorVersion(wgaVersionClass.getDeclaredField("WGAPUBLISHER_MINOR_VERSION").getInt(null));
    version.setMaintenanceVersion(wgaVersionClass.getDeclaredField("WGAPUBLISHER_MAINTENANCE_VERSION").getInt(null));
    version.setPatchVersion(wgaVersionClass.getDeclaredField("WGAPUBLISHER_PATCH_VERSION").getInt(null));
    version.setBuildVersion(wgaVersionClass.getDeclaredField("WGAPUBLISHER_BUILD_VERSION").getInt(null));
   
    return version;
  }
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    private String determineRootPortletNamespace(String dbKey) throws WGAPIException {
       
        UserProfileItem wgaCreationVersion = (UserProfileItem) _profile.getItems().get(WGUserProfile.ITEM_WGACREATIONVERSION);
        if (wgaCreationVersion != null) {
            Version version = new Version(wgaCreationVersion.getText());
           
            // From WGA Version 4.1 on the root portlet has a defined namespace, based on the dbkey of the main context, plus index number 000.
            if (version.isAtLeast(4, 1)) {
                String nsPrefix = buildNamespacePrefix(dbKey);
                return nsPrefix + "000";
            }
        }
       
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    public static final String WGAPUBLISHER_PRODUCT_NAME = "OpenWGA Server";
    public static final String WGAPUBLISHER_PLATFORM_NAME = "Dragon";
   
    public static Version toCsConfigVersion() {
       
        Version version =
            new Version(WGAPUBLISHER_MAJOR_VERSION,
                    WGAPUBLISHER_MINOR_VERSION,
                    WGAPUBLISHER_MAINTENANCE_VERSION,
                    WGAPUBLISHER_PATCH_VERSION,
                    WGAPUBLISHER_BUILD_VERSION);
        return version;
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                catch (InvalidPluginException e) {
                    plugin.addInstallationFault(plugin.new InitialisationFault(e.getMessage()));
                }
               
                // WGA Version
                Version wgaVersion = WGAVersion.toCsConfigVersion();
                int comp = wgaVersion.compareTo(plugin.getCsConfig().getPluginConfig().getMinimumWGAVersion());
                if (comp < 0) {
                    plugin.addInstallationFault(plugin.new InstallationFault(WGAPlugin.InstallationFault.ERROR_WRONG_WGA_VERSION));
                }
               
                // Java Version
                Version javaVersion = Version.getJavaVersion();
                comp = javaVersion.compareTo(plugin.getCsConfig().getPluginConfig().getMinimumJavaVersion());
                if (comp < 0) {
                    plugin.addInstallationFault(plugin.new InstallationFault(WGAPlugin.InstallationFault.ERROR_WRONG_JAVA_VERSION));
                }
               
                // Dependencies
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            String dbKey = plugin.buildDatabaseKey();
            WGDatabase db = contentdbs.get(dbKey);
            if (db != null) {
                try {
                    Long pluginFileTime = (Long) db.getAttribute(DBATTRIB_PLUGIN_FILETIME);
                    Version pluginVersion = (Version) db.getAttribute(DBATTRIB_PLUGIN_VERSION);
                    if (pluginVersion.equals(plugin.getPluginID().getVersion()) &&
                        (pluginFileTime != null && pluginFileTime.equals(new Long(plugin.getFileLastModified())))) {
                        if (!db.isSessionOpen()) {
                            db.openSession();
                        }
                        return db;
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    public void createPluginConfig() {
        PluginConfig config =  PluginConfig.instantiatePluginConfigForCompliance(_csConfig.getVersionCompliance());
        config.getId().getVersion().setBuildVersion(1);
        if (getVersionCompliance() != null) {
            Version minWGAVersion = VERSIONCOMPLIANCE_TO_WGA_VERSION.get(getVersionCompliance().getKey());
            if (minWGAVersion != null) {
                config.setMinimumWGAVersion(minWGAVersion);
            }
           
            // OpenWGA 5.0 requires java 1.5
            if (minWGAVersion.isAtLeast(5, 0)) {
                config.setMinimumJavaVersion(new Version("1.5.0"));
            }
        }
       
        config.setPersonalisationMode(Constants.PERSMODE_AUTO);
       
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    public List<ValidationError> validate() {
        List<ValidationError> errors = new ArrayList<ValidationError>();

        if (hasPluginConfig()) {
            try {
                Version newV = new Version(_pluginVersion);
                newV.setBuildVersion(_pluginBuild);
                _csConfig.getPluginConfig().getId().setVersion(newV);
            }
            catch (RuntimeException e) {
                // unparsable version
                errors.add(new ValidationError("Invalid version format.", new String[] { "pluginVersion" }));
            }

            try {
                Version newV = new Version(_pluginWGAVersion);
                _csConfig.getPluginConfig().setMinimumWGAVersion(newV);
            }
            catch (RuntimeException e) {
                // unparsable version
                errors.add(new ValidationError("Invalid version format.", new String[] { "pluginWGAVersion" }));
            }

            try {
                Version newV = new Version(_pluginJavaVersion);
                _csConfig.getPluginConfig().setMinimumJavaVersion(newV);
            }
            catch (RuntimeException e) {
                // unparsable version
                errors.add(new ValidationError("Invalid version format.", new String[] { "pluginJavaVersion" }));
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