Package org.broad.igv.gs.dm

Examples of org.broad.igv.gs.dm.GSFileMetadata$Deserializer

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    JobConf jobConf = new JobConf(owi.getParseContext().getConf());
    Utilities.setColumnNameList(jobConf, tableScanOp);
    Utilities.copyTableJobPropertiesToConf(
      Utilities.getTableDesc(tbl),
      jobConf);
    Deserializer deserializer = tbl.getDeserializer();
    HiveStoragePredicateHandler.DecomposedPredicate decomposed =
      predicateHandler.decomposePredicate(
        jobConf,
        deserializer,
        originalPredicate);
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  public ArrayList<StructField> getFields() {

    ArrayList<StructField> fields = new ArrayList<StructField>();
    try {
      Deserializer decoder = getDeserializer();

      // Expand out all the columns of the table
      StructObjectInspector structObjectInspector = (StructObjectInspector) decoder
          .getObjectInspector();
      List<? extends StructField> fld_lst = structObjectInspector
          .getAllStructFieldRefs();
      for (StructField field : fld_lst) {
        fields.add(field);
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  public Vector<StructField> getFields() {

    Vector<StructField> fields = new Vector<StructField> ();
    try {
      Deserializer decoder = getDeserializer();

      // Expand out all the columns of the table
      StructObjectInspector structObjectInspector = (StructObjectInspector)decoder.getObjectInspector();
      List<? extends StructField> fld_lst = structObjectInspector.getAllStructFieldRefs();
      for(StructField field: fld_lst) {
        fields.add(field);
      }
    } catch (SerDeException e) {
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  /**
   * Check if the given serde is valid.
   */
  private void validateSerDe(String serdeName) throws HiveException {
    try {
      Deserializer d = SerDeUtils.lookupDeserializer(serdeName);
      if (d != null) {
        LOG.debug("Found class for " + serdeName);
      }
    } catch (SerDeException e) {
      throw new HiveException("Cannot validate serde: " + serdeName, e);
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    String tableName = String.valueOf(tblProps.getProperty("name"));
    String partName = String.valueOf(partSpec);
    // HiveConf.setVar(hconf, HiveConf.ConfVars.HIVETABLENAME, tableName);
    // HiveConf.setVar(hconf, HiveConf.ConfVars.HIVEPARTITIONNAME, partName);
    Deserializer deserializer = (Deserializer) sdclass.newInstance();
    deserializer.initialize(hconf, tblProps);
    StructObjectInspector rawRowObjectInspector = (StructObjectInspector) deserializer
        .getObjectInspector();

    MapOpCtx opCtx = null;
    // Next check if this table has partitions and if so
    // get the list of partition names as well as allocate
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        fileList.setCellRenderer(new CellRenderer());

        MouseListener mouseListener = new MouseAdapter() {
            public void mouseClicked(MouseEvent e) {
                int index = fileList.locationToIndex(e.getPoint());
                GSFileMetadata md = (GSFileMetadata) fileList.getModel().getElementAt(index);
                setSelectedFile(md);
                if (e.getClickCount() == 2) {
                    if (md.isDirectory()) {
                        try {
                            fetchContents(new URL(md.getUrl()));
                        } catch (IOException e1) {
                            e1.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
                        }
                    } else {
                        setVisible(false);
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        if (userRootUrl == null) {
            userRootUrl = dirUrlString;
            // A little trick to get the root meta data
            int idx = userRootUrl.lastIndexOf("/");
            String user = userRootUrl.substring(idx).replace("/", "");
            GSFileMetadata rootMD = new GSFileMetadata(".", "/users/" + user, userRootUrl, "", "", true);
            setSelectedFile(rootMD);
        }

        List<GSFileMetadata> elements = dirListing.getContents();
        //Unless this is the root directory create a "up-one-level" entry
        if (!dirUrlString.equals(userRootUrl)) {
            int lastSlashIdx = dirUrlString.lastIndexOf("/");
            String parentURL = dirUrlString.substring(0, lastSlashIdx);
            elements.add(0, new GSFileMetadata("Parent Directory", "", parentURL, "", "", true));
        }

        ListModel model = new ListModel(dirListing.getContents());
        fileList.setModel(model);
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        try {
            Object[] selections = fileList.getSelectedValues();

            // If there is a single selection, and it is a directory,  load that directory
            if (selections.length == 1) {
                GSFileMetadata md = (GSFileMetadata) selections[0];
                if (md.isDirectory()) {
                    fetchContents(new URL(md.getUrl()));
                    return;
                }
            }

            for (Object obj : selections) {
                if (obj instanceof GSFileMetadata) {
                    GSFileMetadata md = (GSFileMetadata) obj;
                    if (mode == Mode.OPEN) {
                        if (!md.isDirectory()) {
                            selectedFile = md;
                        }
                    }
                }
            }
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                int idx = dirurl.lastIndexOf("/");
                dirurl = dirurl.substring(0, idx);
            }
            String putURL = dirurl + "/" + folderName;
            try {
                GSFileMetadata metaData = DMUtils.createDirectory(putURL);
                if(metaData != null) {
                    setSelectedFile(metaData);
                }
                // Refresh
                fetchContents(new URL(putURL));
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                Object value,            // value to display
                int index,               // cell index
                boolean isSelected,      // is the cell selected
                boolean cellHasFocus)    // the list and the cell have the focus
        {
            GSFileMetadata fileElement = (GSFileMetadata) value;

            String s = value.toString();
            setText(s);
            setIcon(fileElement.isDirectory() ? folderIcon : fileIcon);
            if (isSelected) {
                setBackground(list.getSelectionBackground());
                setForeground(list.getSelectionForeground());
            } else {
                setBackground(list.getBackground());
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