Package org.apache.uima.util

Examples of org.apache.uima.util.XMLSerializer

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    xmlReader.parse(new InputSource(new StringReader(xcas)));

    // now reserialize including OutOfTypeSystem data
    XCASSerializer xcasSer = new XCASSerializer(cas.getTypeSystem());
    StringWriter sw = new StringWriter();
    XMLSerializer xmlSer = new XMLSerializer(sw, false);
    xcasSer.serialize(cas, xmlSer.getContentHandler(), true, ootsd);
    String xml = sw.getBuffer().toString();
    // System.out.println(xml);

    // make sure the value feature was not lost (it will be serialized as an attribute however)
    assertTrue(xml.indexOf("value=\"this is the value feature\"") != -1);
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    assertTrue(tIndex.size() == 2); // document annot and this one
    assertTrue(t2Index.size() == 2); // ditto

    // serialize
    StringWriter sw = new StringWriter();
    XMLSerializer xmlSer = new XMLSerializer(sw, false);
    XCASSerializer xcasSer = new XCASSerializer(cas.getTypeSystem());
    xcasSer.serialize(cas, xmlSer.getContentHandler(), true);
    String xml = sw.getBuffer().toString();

    // deserialize into another CAS (repeat twice to check it still works after reset)
    CAS newCas = CasCreationUtils.createCas(typeSystem, new TypePriorities_impl(), indexes);
    for (int i = 0; i < 2; i++) {
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    assertTrue(gerView.getDocumentText().equals("das bier ist gut"));
    assertTrue(gerView.getAnnotationIndex().size() == 5); // 4 annots plus documentAnnotation

    // reserialize
    StringWriter sw = new StringWriter();
    XMLSerializer xmlSer = new XMLSerializer(sw, false);
    XCASSerializer xcasSer = new XCASSerializer(v1cas.getTypeSystem());
    xcasSer.serialize(v1cas, xmlSer.getContentHandler(), true);
    String xml = sw.getBuffer().toString();

    // deserialize into another CAS
    cas.reset();
    XCASDeserializer deser2 = new XCASDeserializer(cas.getTypeSystem());
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      outStream = new FileOutputStream(outFile);
      if (hasDefaultView) {
        String xmlAnnotations = cas2xml.generateXML(aCAS);
        outStream.write(xmlAnnotations.getBytes("UTF-8"));
      } else {
        XMLSerializer xmlSer = new XMLSerializer(outStream, false);
        if (mXCAS.equalsIgnoreCase("xcas")) {
          XCASSerializer ser = new XCASSerializer(aCAS.getTypeSystem());
          ser.serialize(aCAS, xmlSer.getContentHandler());
        }
        else {
          XmiCasSerializer ser = new XmiCasSerializer(aCAS.getTypeSystem());
          ser.serialize(aCAS, xmlSer.getContentHandler());
        }
      }
    } catch (CASException e) {
      throw new ResourceProcessException(e);
    } catch (IOException e) {
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    try {
      // write XMI
      out = new FileOutputStream(name);
      XmiCasSerializer ser = new XmiCasSerializer(aCas.getTypeSystem());
      XMLSerializer xmlSer = new XMLSerializer(out, false);
      ser.serialize(aCas, xmlSer.getContentHandler());
    } finally {
      if (out != null) {
        out.close();
      }
    }
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      es.setLocalSofaData("this beer is good");

      // Test Multiple Sofas across XCAS serialization
      XCASSerializer ser = new XCASSerializer(cas.getTypeSystem());
      OutputStream outputXCAS = new FileOutputStream("Sofa.xcas");
      XMLSerializer xmlSer = new XMLSerializer(outputXCAS);
      try {
        ser.serialize(cas, xmlSer.getContentHandler());
        outputXCAS.close();
      } catch (IOException e) {
        e.printStackTrace();
      } catch (SAXException e) {
        e.printStackTrace();
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    // serialize
    XCASSerializer ser = new XCASSerializer(cas.getTypeSystem());
    OutputStream outputXCAS = new FileOutputStream(JUnitExtension
            .getFile("ExampleCas/newprimitives.xcas"));
    XMLSerializer xmlSer = new XMLSerializer(outputXCAS);
    ser.serialize(cas, xmlSer.getContentHandler());

    // reset
    cas.reset();

    // deserialize
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    createExampleFS(cas);

    // serialize

    StringWriter sw = new StringWriter();
    XMLSerializer xmlSer = new XMLSerializer(sw, false);
    XmiCasSerializer xmiSer = new XmiCasSerializer(cas.getTypeSystem());
    xmiSer.serialize(cas, xmlSer.getContentHandler());
    String xml = sw.getBuffer().toString();
    // System.out.println(xml);
    // reset
    cas.reset();
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  public void testInvalidCharsInDocumentText() throws Exception {
    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
    char badChar = 0x1A;
    cas.setDocumentText("Text with bad char: " + badChar);
    OutputStream out = new FileOutputStream(this.outputFile);
    XMLSerializer xmlSerializer = new XMLSerializer(out);
    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
    boolean caughtException = false;
    try {
      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
    } catch (SAXParseException e) {
      caughtException = true;
    }
    out.close();
    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
        caughtException);
   
    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
    out = new FileOutputStream(this.outputFile);
    try {
      XMLSerializer xml11Serializer = new XMLSerializer(out);
      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
    }
    finally {
      out.close();
    }
  }
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  public void testInvalidCharsInFeatureValue() throws Exception {
    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
    char badChar = 0x1A;
    cas.setDocumentLanguage("a" + badChar);
    OutputStream out = new FileOutputStream(this.outputFile);
    XMLSerializer xmlSerializer = new XMLSerializer(out);
    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
    boolean caughtException = false;
    try {
      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
    } catch (SAXParseException e) {
      caughtException = true;
    }
    out.close();
    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
        caughtException);
   
    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
    out = new FileOutputStream(this.outputFile);
    try {
      XMLSerializer xml11Serializer = new XMLSerializer(out);
      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
    }
    finally {
      out.close();
    }   
  }
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Related Classes of org.apache.uima.util.XMLSerializer

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  • org.apache.ctakes.coreference.cc.PreprocessAndWriteXmi$SerializeDocumentToXMI
  • org.apache.ctakes.relationextractor.eval.PreprocessAndWriteXmi$SerializeDocumentToXMI
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  • org.apache.ctakes.temporal.eval.Evaluation_ImplBase$XMIWriter
  • org.apache.ctakes.ytex.uima.annotators.DBConsumer
  • org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl
  • org.apache.uima.aae.deployment.impl.AEDeploymentDescription_Impl
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