Package org.apache.uima.jcas.tcas

Examples of org.apache.uima.jcas.tcas.Annotation

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      TOP_Type type = jcas.getType(org.apache.uima.jcas.tcas.Annotation.type);
      assertTrue(type instanceof org.apache.uima.jcas.tcas.Annotation_Type);
      type = jcas.getType(Annotation.typeIndexID);
      assertTrue(type instanceof Annotation_Type);

      Annotation a1 = new Annotation(jcas, 4, 5);
    } catch (Exception e) {
      JUnitExtension.handleException(e);
    }
  }
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  public void testNonJCasCoveredByJCas() throws Exception {
    try {
      CAS localCas = jcas.getCas();
      Type subTok = localCas.getTypeSystem().getType("SubToken");
      Annotation a1 = new Annotation(jcas);
      a1.addToIndexes();
      FeatureStructure f1 = localCas.createFS(subTok);
      localCas.getIndexRepository().addFS(f1);

      JFSIndexRepository ir = jcas.getJFSIndexRepository();
      FSIndex index = ir.getAnnotationIndex();
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    }
    //check that this does not leave JCAS in an inconsistent state
    //(a check for bug UIMA-738)
    Iterator<Annotation> iter = jcas.getAnnotationIndex().iterator();
    assertTrue(iter.hasNext());
    Annotation annot = iter.next();
    assertEquals("This is a test.", annot.getCoveredText());
  }
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      // TODO Auto-generated catch block
      e1.printStackTrace();
      assertTrue(false);
    }
    FSIndex jcasSetIndex = jcas.getJFSIndexRepository().getIndex(CASTestSetup.ANNOT_SET_INDEX);
    Annotation jcasAnnotation = (Annotation) jcasSetIndex.find(annot);
    assertNotNull(jcasAnnotation);
    assertNull(jcasSetIndex.find(this.cas.createAnnotation(this.annotationType, -1, -1)));

    // /////////////////////////////////////////////////////////////////////////
    // Test fast fail.
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  private void fillFS(FeatureStructure fs, FeatureStructure newFS, boolean withFeatures) {

    if (fs instanceof AnnotationFS) {

      Annotation a = (Annotation) newFS;

      a.setBegin(((AnnotationFS) fs).getBegin());

      a.setEnd(((AnnotationFS) fs).getEnd());

    }

    if (withFeatures) {
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    FSIterator<AnnotationFS> iter = index.iterator();

    while (iter.isValid()) {
      EvalAnnotation a = (EvalAnnotation) iter.next();
      Annotation original = a.getOriginal();
      Type originalType = original.getType();

      if (map.containsKey(originalType.getName())) {
        TypeEvalData element = (TypeEvalData) map.get(originalType.getName());
        int oldCount = element.getTruePositives();
        element.setTruePositives(oldCount + 1);
      } else {
        TypeEvalData newData = new TypeEvalData(originalType.getName(), 1, 0, 0);
        map.put(originalType.getName(), newData);
      }
    }

    index = resultCas.getAnnotationIndex(falsePositiveType);
    iter = index.iterator();

    while (iter.isValid()) {
      EvalAnnotation a = (EvalAnnotation) iter.next();
      Annotation original = a.getOriginal();
      Type originalType = original.getType();

      if (map.containsKey(originalType.getName())) {
        TypeEvalData element = (TypeEvalData) map.get(originalType.getName());
        int oldCount = element.getFalsePositives();
        element.setFalsePositives(oldCount + 1);
      } else {
        TypeEvalData newData = new TypeEvalData(originalType.getName(), 0, 1, 0);
        map.put(originalType.getName(), newData);
      }
    }

    index = resultCas.getAnnotationIndex(falseNegativeType);
    iter = index.iterator();

    while (iter.isValid()) {
      EvalAnnotation a = (EvalAnnotation) iter.next();
      Annotation original = a.getOriginal();
      Type originalType = original.getType();

      if (map.containsKey(originalType.getName())) {
        TypeEvalData element = (TypeEvalData) map.get(originalType.getName());
        int oldCount = element.getFalseNegatives();
        element.setFalseNegatives(oldCount + 1);
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    return result;
  }

  private void fillFS(FeatureStructure fs, FeatureStructure newFS, boolean withFeatures) {
    if (fs instanceof AnnotationFS) {
      Annotation a = (Annotation) newFS;
      a.setBegin(((AnnotationFS) fs).getBegin());
      a.setEnd(((AnnotationFS) fs).getEnd());
    }
    if (withFeatures) {
      CAS testCas = fs.getCAS();
      CAS runCas = newFS.getCAS();
      TypeSystem testTS = testCas.getTypeSystem();
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    return run;
  }

  private void fillFS(FeatureStructure fs, FeatureStructure newFS, boolean withFeatures) {
    if (fs instanceof AnnotationFS) {
      Annotation a = (Annotation) newFS;
      a.setBegin(((AnnotationFS) fs).getBegin());
      a.setEnd(((AnnotationFS) fs).getEnd());
    }
    if (withFeatures) {
      CAS testCas = fs.getCAS();
      CAS runCas = newFS.getCAS();
      TypeSystem testTS = testCas.getTypeSystem();
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    return run;
  }

  private void fillFS(FeatureStructure fs, FeatureStructure newFS, boolean withFeatures) {
    if (fs instanceof AnnotationFS) {
      Annotation a = (Annotation) newFS;
      a.setBegin(((AnnotationFS) fs).getBegin());
      a.setEnd(((AnnotationFS) fs).getEnd());
    }
    if (withFeatures) {
      CAS testCas = fs.getCAS();
//      CAS runCas = newFS.getCAS();
      TypeSystem testTS = testCas.getTypeSystem();
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        return;
      }
      Type type = structureType.getType(element.getParent());
      FeatureStructure newFS = stream.getCas().createFS(type);
      if (newFS instanceof Annotation) {
        Annotation a = (Annotation) newFS;
        a.setBegin(matchedAnnotation.getBegin());
        a.setEnd(matchedAnnotation.getEnd());
        stream.addAnnotation(a, match);
      }
      TOP newStructure = null;
      if (newFS instanceof TOP) {
        newStructure = (TOP) newFS;
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TOP

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