Examples of org.apache.uima.jcas.JFSIndexRepository

org.apache.uima.jcas.JFSIndexRepository
Provides the same function as the FSIndexRepository except that the variants that take a "type" argument take type arguments obtainable easily from the JCas type.


    String text = jcas.getDocumentText();


    try {
      if (useSegments) {
        JFSIndexRepository indexes = jcas.getJFSIndexRepository();
        Iterator segmentItr = indexes.getAnnotationIndex(Segment.type)
            .iterator();
        while (segmentItr.hasNext()) {
          Segment segmentAnnotation = (Segment) segmentItr.next();
          String segmentID = segmentAnnotation.getId();

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  /**
   * A utility method that annotates a given range.
   */
  protected void annotateRange(JCas jcas, String text, int rangeBegin,
      int rangeEnd) throws AnalysisEngineProcessException {
    JFSIndexRepository indexes = jcas.getJFSIndexRepository();
    Iterator tokenItr = indexes.getAnnotationIndex(BaseToken.type)
        .iterator();
    while (tokenItr.hasNext()) {
      BaseToken tokenAnnotation = (BaseToken) tokenItr.next();
      if (tokenAnnotation.getBegin() >= rangeBegin
          && tokenAnnotation.getEnd() <= rangeEnd) {

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    */
   @Override
   public Iterator<LookupToken> getLookupTokenIterator( final JCas jcas ) throws AnnotatorInitializationException {
      final List<LookupToken> ltList = new ArrayList<LookupToken>();


      final JFSIndexRepository indexes = jcas.getJFSIndexRepository();
      final AnnotationIndex<Annotation> annotationIndex = indexes.getAnnotationIndex( BaseToken.type );
      for ( Annotation annotation : annotationIndex ) {
         if ( !(annotation instanceof BaseToken) ) {
            iv_logger.warn( getClass().getName() + " getLookupTokenIterator(..) Annotation is not a BaseToken" );
            continue;
         }

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   /**
    * {@inheritDoc}
    */
   @Override
   public Iterator<Annotation> getLookupWindowIterator( final JCas jcas ) throws AnnotatorInitializationException {
      final JFSIndexRepository indexes = jcas.getJFSIndexRepository();
      return indexes.getAnnotationIndex( Sentence.type ).iterator();
   }

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      System.out.println(" jcas "+ jcas.getViewName());
      if (!useSegments) {
        // annotate over full doc text
        annotateRange(jcas, text, 0, text.length());
      } else {
        JFSIndexRepository indexes = jcas.getJFSIndexRepository();
        Iterator<?> segmentItr = indexes.getAnnotationIndex(
            Segment.type).iterator();
        while (segmentItr.hasNext()) {
          Segment segmentAnnotation = (Segment) segmentItr.next();
          String segmentID = segmentAnnotation.getId();

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  protected void annotateRange(JCas jcas, String text, int rangeBegin,
      int rangeEnd) throws AnnotatorContextException {
    if (iv_logger.isInfoEnabled())
      iv_logger.info("started Sentence merging process.");


    JFSIndexRepository indexes = jcas.getJFSIndexRepository();


    Iterator<?> sentItr = indexes.getAnnotationIndex(Sentence.type)
        .iterator();
    Sentence prevSent = null;
    Sentence currSent = null;


    Map<Integer, Sentence> sentences = getSentencesOrderById(sentItr);

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    try {
      
        iv_logger.info("process(JCas)");


      JFSIndexRepository indexes = jcas.getJFSIndexRepository();
      Iterator<?> sentItr = indexes.getAnnotationIndex(Sentence.type).iterator();
      AnnotationIndex baseTokenIndex = jcas.getJFSIndexRepository().getAnnotationIndex(
          org.apache.ctakes.typesystem.type.syntax.BaseToken.type);
      
      while (sentItr.hasNext()) {
        Sentence sentAnnot = (Sentence) sentItr.next();

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    return -1;// screams error!
  }


  private Segment getSegmentContainingOffsets(JCas jcas, int start, int end)
  {
    JFSIndexRepository indexes = jcas.getJFSIndexRepository();
    Iterator segmentItr = indexes.getAnnotationIndex(Segment.type).iterator();


    while (segmentItr.hasNext())
    {
      Segment seg = (Segment) segmentItr.next();

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        boolean statusFound = false;
        if (!keepNoChangeStatus) {
          // All entries may not be appropriate, so some
          // filtering
          // may need to be implemented here
          JFSIndexRepository indexes = jcas.getJFSIndexRepository();
          Iterator subSectionItr = indexes.getAnnotationIndex(
              SubSectionAnnotation.type).iterator();


          String statusKey = null;
          while (subSectionItr.hasNext() && !statusFound)
          {

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   * @param end
   * @return int[] - int[0] is begin offset and int[1] is end offset
   */
  private int[] getSentenceSpanContainingGivenSpan(JCas jcas, int begin, int end)
  {
    JFSIndexRepository indexes = jcas.getJFSIndexRepository();
    Iterator iter = indexes.getAnnotationIndex(Sentence.type).iterator();
    int[] span = new int[2];


    while (iter.hasNext())
    {
      Sentence sa = (Sentence) iter.next();

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