Package org.apache.uima.collection.metadata

Examples of org.apache.uima.collection.metadata.CpeDescription

116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
      // Enable schema validation (omit this to speed up initialization)
      // UIMAFramework.getXMLParser().enableSchemaValidation(true);

      // build a Collection Processing Engine descriptor that will drive processing
      CpeDescription cpeDesc = CpeDescriptorFactory.produceDescriptor();

      // add collection reader that will read input docs
      cpeDesc.addCollectionReader(FileSystemCollectionReader.getDescriptorURL().toString());
      // specify configuration parameters for collection reader
      CasProcessorConfigurationParameterSettings crSettings = CpeDescriptorFactory
              .produceCasProcessorConfigurationParameterSettings();
      CpeCollectionReader cpeCollRdr = cpeDesc.getAllCollectionCollectionReaders()[0];
      cpeCollRdr.setConfigurationParameterSettings(crSettings);
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_INPUTDIR, inputDir
              .getAbsolutePath());
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_ENCODING, encoding);
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_LANGUAGE, language);
      if (xcasInput) {
        crSettings.setParameterValue(FileSystemCollectionReader.PARAM_XCAS, "XCAS");
      } else if (xmiInput) {
        crSettings.setParameterValue(FileSystemCollectionReader.PARAM_XCAS, "XMI");
      }
      if (xLenient) {
        crSettings.setParameterValue(FileSystemCollectionReader.PARAM_LENIENT, "true");
      }

      // if XML tag was specified, configure XmlDetagger annotator and add to CPE
      CpeCasProcessor xmlDetaggerCasProc = null;
      if (xmlTagName != null && xmlTagName.length() > 0) {
        xmlDetaggerCasProc = CpeDescriptorFactory.produceCasProcessor("XmlDetagger");
        CpeComponentDescriptor cpeComponentDescriptor =
          CpeDescriptorFactory.produceComponentDescriptor(XmlDetagger.getDescriptorURL().toString());
        xmlDetaggerCasProc.setCpeComponentDescriptor(cpeComponentDescriptor);
        CasProcessorConfigurationParameterSettings detaggerSettings = CpeDescriptorFactory
                .produceCasProcessorConfigurationParameterSettings();
        xmlDetaggerCasProc.setConfigurationParameterSettings(detaggerSettings);
        detaggerSettings.setParameterValue(XmlDetagger.PARAM_TEXT_TAG, xmlTagName);
        xmlDetaggerCasProc.setMaxErrorCount(0);
        cpeDesc.addCasProcessor(xmlDetaggerCasProc);
      }

      // add user's AE to CPE
      CpeCasProcessor casProc = CpeDescriptorFactory.produceCasProcessor("UserAE");
      CpeComponentDescriptor cpeComponentDescriptor =
        CpeDescriptorFactory.produceComponentDescriptor(aeSpecifierFile.getAbsolutePath());
      casProc.setCpeComponentDescriptor(cpeComponentDescriptor);
      casProc.setMaxErrorCount(0);
      cpeDesc.addCasProcessor(casProc);

      // add CAS Consumer that will write the output
      // create and configure CAS consumer that will write the output
      CpeCasProcessor casCon = null;
      if (outputDir != null) {
        casCon = CpeDescriptorFactory.produceCasProcessor("CasConsumer");
        cpeComponentDescriptor =
          CpeDescriptorFactory.produceComponentDescriptor(InlineXmlCasConsumer.getDescriptorURL().toString());
        casCon.setCpeComponentDescriptor(cpeComponentDescriptor);       
        CasProcessorConfigurationParameterSettings consumerSettings = CpeDescriptorFactory
                .produceCasProcessorConfigurationParameterSettings();
        casCon.setConfigurationParameterSettings(consumerSettings);
        consumerSettings.setParameterValue(InlineXmlCasConsumer.PARAM_OUTPUTDIR, outputDir
                .getAbsolutePath());
        if (xcasInput) {
          consumerSettings.setParameterValue(InlineXmlCasConsumer.PARAM_XCAS, "XCAS");
        } else if (xmiInput) {
          consumerSettings.setParameterValue(InlineXmlCasConsumer.PARAM_XCAS, "XMI");
        }
        casCon.setMaxErrorCount(0);
        cpeDesc.addCasProcessor(casCon);
      }

      // if XML detagger is used, we need to configure sofa mappings for the CPE
      if (xmlDetaggerCasProc != null) {
        // For XML detagger map default sofa to "xmlDocument"
View Full Code Here
69
70
71
72
73
74
75
76
77
78
79
      System.exit(1);
    }

    // parse CPE descriptor
    System.out.println("Parsing CPE Descriptor");
    CpeDescription cpeDesc = UIMAFramework.getXMLParser().parseCpeDescription(
            new XMLInputSource(args[0]));
    // instantiate CPE
    System.out.println("Instantiating CPE");
    mCPE = UIMAFramework.produceCollectionProcessingEngine(cpeDesc);
View Full Code Here
94
95
96
97
98
99
100
101
102
103
104
            "Unable to create " + generated.getAbsolutePath(),
            generated.exists() || generated.mkdirs());

        // Run all of the CPE's in the Dir
        logger.info("Parsing CPE Descriptor:" + file.getName());
        CpeDescription cpeDesc = UIMAFramework.getXMLParser()
            .parseCpeDescription(new XMLInputSource(file));
        CollectionProcessingEngine mCPE = UIMAFramework
            .produceCollectionProcessingEngine(cpeDesc);
        // Create and register a Status Callback Listener
        mCPE.addStatusCallbackListener(new StatusCallbackListenerImpl(
View Full Code Here
90
91
92
93
94
95
96
97
98
99
100
      System.exit(1);
    }

    // parse CPE descriptor
    System.out.println("Parsing CPE Descriptor");
    CpeDescription cpeDesc = UIMAFramework.getXMLParser().parseCpeDescription(
            new XMLInputSource(args[0]));
    // instantiate CPE
    System.out.println("Instantiating CPE");
    mCPE = UIMAFramework.produceCollectionProcessingEngine(cpeDesc);
View Full Code Here
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
      // Enable schema validation (omit this to speed up initialization)
      // UIMAFramework.getXMLParser().enableSchemaValidation(true);

      // build a Collection Processing Engine descriptor that will drive processing
      CpeDescription cpeDesc = CpeDescriptorFactory.produceDescriptor();

      // add collection reader that will read input docs
      cpeDesc.addCollectionReader(FileSystemCollectionReader.getDescriptorURL().toString());
      // specify configuration parameters for collection reader
      CasProcessorConfigurationParameterSettings crSettings = CpeDescriptorFactory
              .produceCasProcessorConfigurationParameterSettings();
      CpeCollectionReader cpeCollRdr = cpeDesc.getAllCollectionCollectionReaders()[0];
      cpeCollRdr.setConfigurationParameterSettings(crSettings);
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_INPUTDIR, inputDir
              .getAbsolutePath());
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_ENCODING, encoding);
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_LANGUAGE, language);
      crSettings.setParameterValue(FileSystemCollectionReader.PARAM_XCAS, Boolean
              .toString(xcasInput));

      // if XML tag was specified, configure XmlDetagger annotator and add to CPE
      CpeCasProcessor xmlDetaggerCasProc = null;
      if (xmlTagName != null && xmlTagName.length() > 0) {
        xmlDetaggerCasProc = CpeDescriptorFactory.produceCasProcessor("XmlDetagger");
        xmlDetaggerCasProc.setDescriptor(XmlDetagger.getDescriptorURL().toString());
        CasProcessorConfigurationParameterSettings detaggerSettings = CpeDescriptorFactory
                .produceCasProcessorConfigurationParameterSettings();
        xmlDetaggerCasProc.setConfigurationParameterSettings(detaggerSettings);
        detaggerSettings.setParameterValue(XmlDetagger.PARAM_TEXT_TAG, xmlTagName);
        xmlDetaggerCasProc.setMaxErrorCount(0);
        cpeDesc.addCasProcessor(xmlDetaggerCasProc);
      }

      // add user's AE to CPE
      CpeCasProcessor casProc = CpeDescriptorFactory.produceCasProcessor("UserAE");
      casProc.setDescriptor(aeSpecifierFile.getAbsolutePath());
      casProc.setMaxErrorCount(0);
      cpeDesc.addCasProcessor(casProc);

      // add CAS Consumer that will write the output
      // create and configure CAS consumer that will write the output
      CpeCasProcessor casCon = null;
      if (outputDir != null) {
        casCon = CpeDescriptorFactory.produceCasProcessor("CasConsumer");
        casCon.setDescriptor(InlineXmlCasConsumer.getDescriptorURL().toString());
        CasProcessorConfigurationParameterSettings consumerSettings = CpeDescriptorFactory
                .produceCasProcessorConfigurationParameterSettings();
        casCon.setConfigurationParameterSettings(consumerSettings);
        consumerSettings.setParameterValue(InlineXmlCasConsumer.PARAM_OUTPUTDIR, outputDir
                .getAbsolutePath());
        consumerSettings.setParameterValue(InlineXmlCasConsumer.PARAM_XCAS, Boolean
                .toString(xcasInput));
        casCon.setMaxErrorCount(0);
        cpeDesc.addCasProcessor(casCon);
      }

      // if XML detagger is used, we need to configure sofa mappings for the CPE
      if (xmlDetaggerCasProc != null) {
        // For XML detagger map default sofa to "xmlDocument"
View Full Code Here
293
294
295
296
297
298
299
300
301
302
303
   */
  public static boolean testCpeCongifuration(File cpeSpecifierFile) throws IOException,
          InvalidXMLException, ResourceInitializationException {
    try {
      XMLInputSource xmlIn = new XMLInputSource(cpeSpecifierFile);
      CpeDescription cpeDescription = UIMAFramework.getXMLParser().parseCpeDescription(xmlIn);
      CollectionProcessingEngine cpe = UIMAFramework
              .produceCollectionProcessingEngine(cpeDescription);
      return cpe != null;
    } catch (IOException ioE) {
      System.err
View Full Code Here
64
65
66
67
68
69
70
71
72
73
74
      System.exit(1);
    }

    // parse CPE descriptor
    System.out.println("Parsing CPE Descriptor");
    CpeDescription cpeDesc = UIMAFramework.getXMLParser().parseCpeDescription(
            new XMLInputSource(args[0]));
    // instantiate CPE
    System.out.println("Instantiating CPE");
    mCPE = UIMAFramework.produceCollectionProcessingEngine(cpeDesc);
View Full Code Here
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
  /**
   * @return
   */
  private CpeDescription createEmptyCpeDescription() {
    CpeDescription cpeDesc = CpeDescriptorFactory.produceDescriptor();
    // We use CAS pool size default of 3
    try {
      CpeCasProcessors cpeCasProcs = CpeDescriptorFactory.produceCasProcessors();
      cpeDesc.setCpeCasProcessors(cpeCasProcs);
      cpeCasProcs.setPoolSize(3);
    } catch (CpeDescriptorException e) {
      e.printStackTrace(); // this should never happen
    }
    return cpeDesc;
View Full Code Here
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
   *
   * @return CollectionProcessingEngine - initialized cpe
   */
  private CollectionProcessingEngine setupCpm(int documentCount, String exceptionName,
          int exceptionSequence, String functionName) {
    CpeDescription cpeDesc = null;
    CollectionProcessingEngine cpe = null;

    try {
      String colReaderBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestCollectionReader.xml").getAbsolutePath();
      String taeBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestAnnotator.xml").getAbsolutePath();
      String casConsumerBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestCasConsumer.xml").getAbsolutePath();

      // first, prepare all descriptors as needed
      String colReaderDesc = DescriptorMakeUtil.makeCollectionReader(colReaderBase, documentCount);
      String taeDesc = DescriptorMakeUtil.makeAnalysisEngine(taeBase);
      String casConsumerDesc = DescriptorMakeUtil.makeCasConsumer(casConsumerBase, true,
              functionName, exceptionSequence, exceptionName);

      // secondly, create the cpm based on the descriptors
      cpeDesc = CpeDescriptorFactory.produceDescriptor();

      // managing the default behaviour of this client
      CpeIntegratedCasProcessor integratedProcessor = CpeDescriptorFactory
              .produceCasProcessor("ErrorTestAnnotator");
      integratedProcessor.setDescriptor(taeDesc);
      integratedProcessor.setActionOnMaxError("terminate");

      CpeIntegratedCasProcessor casConsumer = CpeDescriptorFactory
              .produceCasProcessor("ErrorTest CasConsumer");
      casConsumer.setDescriptor(casConsumerDesc);

      // - add all descriptors
      cpeDesc.addCollectionReader(colReaderDesc);
      cpeDesc.addCasProcessor(integratedProcessor);
      cpeDesc.addCasProcessor(casConsumer);
      cpeDesc.setInputQueueSize(2);
      cpeDesc.setOutputQueueSize(2);
      cpeDesc.setProcessingUnitThreadCount(1);
      // - Create a new CPE
      cpe = UIMAFramework.produceCollectionProcessingEngine(cpeDesc, null, null);
    } catch (Exception e) {
      e.printStackTrace();
    }
View Full Code Here
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
   *
   * @return CollectionProcessingEngine - initialized cpe
   */
  private CollectionProcessingEngine setupCpm(int documentCount, String exceptionName,
          int exceptionSequence, String functionName) {
    CpeDescription cpeDesc = null;
    CollectionProcessingEngine cpe = null;

    try {
      String colReaderBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestCollectionReader.xml").getAbsolutePath();
      String taeBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestAnnotator.xml").getAbsolutePath();
      String casConsumerBase = JUnitExtension.getFile("CpmTests" + FS + "ErrorTestCasConsumer.xml").getAbsolutePath();

      // first, prepare all descriptors as needed
      String colReaderDesc = DescriptorMakeUtil.makeCollectionReader(colReaderBase, true,
              functionName, exceptionSequence, exceptionName, documentCount);
      String taeDesc = DescriptorMakeUtil.makeAnalysisEngine(taeBase);
      String casConsumerDesc = DescriptorMakeUtil.makeCasConsumer(casConsumerBase);

      // secondly, create the cpm based on the descriptors
      cpeDesc = CpeDescriptorFactory.produceDescriptor();

      // managing the default behaviour of this client
      CpeIntegratedCasProcessor integratedProcessor = CpeDescriptorFactory
              .produceCasProcessor("ErrorTestAnnotator");
      integratedProcessor.setDescriptor(taeDesc);

      CpeIntegratedCasProcessor casConsumer = CpeDescriptorFactory
              .produceCasProcessor("ErrorTest CasConsumer");
      casConsumer.setDescriptor(casConsumerDesc);

      // - add all descriptors
      cpeDesc.addCollectionReader(colReaderDesc);
      cpeDesc.addCasProcessor(integratedProcessor);
      cpeDesc.addCasProcessor(casConsumer);
      cpeDesc.setInputQueueSize(2);
      cpeDesc.setOutputQueueSize(2);
      cpeDesc.setProcessingUnitThreadCount(1);
      // - Create a new CPE
      cpe = UIMAFramework.produceCollectionProcessingEngine(cpeDesc, null, null);
    } catch (Exception e) {
      e.printStackTrace();
    }
View Full Code Here
TOP

Related Classes of org.apache.uima.collection.metadata.CpeDescription

  • org.apache.ctakes.core.cpe.CmdLineCpeRunner
  • org.apache.ctakes.postagger.test.CpeTests
  • org.apache.ctakes.regression.test.RegressionPipelineTest
  • org.apache.ctakes.ytex.tools.RunCPE
  • org.apache.uima.application.metadata.impl.UimaApplication_Impl
  • org.apache.uima.collection.impl.CollectionProcessingEngine_implTest
  • org.apache.uima.collection.impl.cpm.CasPoolTest
  • org.apache.uima.collection.impl.cpm.CpeDescriptorSerialization_Test
  • org.apache.uima.collection.impl.cpm.CpeImportTest
  • org.apache.uima.collection.impl.cpm.CpmAE_ErrorTest
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.