Examples of org.apache.uima.cas.FeatureStructure

org.apache.uima.cas.FeatureStructure
Interface for feature structures.
Note that object identity is not meaningful for feature structures. You may ask the CAS for the same feature structure two times in a row, and get different object references. Use {@link #equals equals()} instead.


    // TODO: Create confidence FS
    // contains String name type
    // contains Double prob
    if (documentConfidenceType != null) {
      FeatureStructure confidenceFS = cas.createFS(documentConfidenceType);
      confidenceFS.setDoubleValue(documentConfidenceFeature,
          documentConfidence.mean());
      confidenceFS.setStringValue(documentConfidenceNameTypeFeature,
          mNameType.getName());
      cas.addFsToIndexes(confidenceFS);
    }


    // Clears the adaptive data which was created for the current document

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        Type srcDocInfoType = aCas.getTypeSystem().getType(
                "org.apache.uima.examples.SourceDocumentInformation");
        if (srcDocInfoType != null) {
          FSIterator it = aCas.getIndexRepository().getAllIndexedFS(srcDocInfoType);
          if (it.hasNext()) {
            FeatureStructure srcDocInfoFs = it.get();
            Feature uriFeat = srcDocInfoType.getFeatureByBaseName("uri");
            Feature offsetInSourceFeat = srcDocInfoType.getFeatureByBaseName("offsetInSource");
            String uri = srcDocInfoFs.getStringValue(uriFeat);
            int offsetInSource = srcDocInfoFs.getIntValue(offsetInSourceFeat);
            File inFile;
            try {
              inFile = new File(new URL(uri).getPath());
              String outFileName = inFile.getName();
              if (offsetInSource > 0) {

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      FSIndex ind = irep.getIndex("Index1");
      Assert.assertNotNull(ind);
      Assert.assertEquals("Type1", ind.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind.getIndexingStrategy());


      FeatureStructure fs1 = cas.createFS(t1);
      fs1.setIntValue(f1, 0);
      FeatureStructure fs2 = cas.createFS(t1);
      fs2.setIntValue(f1, 1);
      Assert.assertTrue(ind.compare(fs1, fs2) < 0);


      FSIndex ind2 = irep.getIndex("Index2");
      Assert.assertNotNull(ind2);
      Assert.assertEquals("Type2", ind2.getType().getName());
      Assert.assertEquals(FSIndex.SET_INDEX, ind2.getIndexingStrategy());


      FeatureStructure fs3 = cas.createFS(t2);
      fs3.setStringValue(f2, "One");
      FeatureStructure fs4 = cas.createFS(t2);
      fs4.setStringValue(f2, "Two");
      Assert.assertTrue(ind2.compare(fs3, fs4) > 0);


      FSIndex ind3 = irep.getIndex("Index3");
      Assert.assertNotNull(ind3);
      Assert.assertEquals("uima.tcas.Annotation", ind3.getType().getName());
      Assert.assertEquals(FSIndex.SORTED_INDEX, ind3.getIndexingStrategy());


      AnnotationFS fs5 = cas.createAnnotation(t1, 0, 0);
      AnnotationFS fs6 = cas.createAnnotation(t2, 0, 0);
      AnnotationFS fs7 = cas.createAnnotation(t1, 0, 0);
      Assert.assertTrue(ind3.compare(fs5, fs6) < 0);
      Assert.assertTrue(ind3.compare(fs6, fs7) > 0);


      // only way to check if allowed values is correct is to try to set an
      // invalid value?
      CASRuntimeException ex = null;
      try {
        fs4.setStringValue(f2, "Three");
      } catch (CASRuntimeException e) {
        ex = e;
      }
      Assert.assertNotNull(ex);
    } catch (Exception e) {

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      CAS inputCas1 = ae.newCAS();
      Type sdiType = inputCas1.getTypeSystem().getType(
              "org.apache.uima.examples.SourceDocumentInformation");
      Feature uriFeat = sdiType.getFeatureByBaseName("uri");
      inputCas1.setDocumentText("This is");
      FeatureStructure sdiFS = inputCas1.createFS(sdiType);
      sdiFS.setStringValue(uriFeat, "cas1");
      inputCas1.getIndexRepository().addFS(sdiFS);
      CAS inputCas2 = ae.newCAS();
      inputCas2.setDocumentText(" one.\nThis is");
      FeatureStructure sdiFS2 = inputCas2.createFS(sdiType);
      sdiFS2.setStringValue(uriFeat, "cas2");
      inputCas2.getIndexRepository().addFS(sdiFS2);
      CAS inputCas3 = ae.newCAS();
      inputCas3.setDocumentText(" two.\n");
      FeatureStructure sdiFS3 = inputCas3.createFS(sdiType);
      sdiFS3.setStringValue(uriFeat, "cas3");
      inputCas3.getIndexRepository().addFS(sdiFS3);


      // input first CAS. Should be no segments yet.
      CasIterator iter = ae.processAndOutputNewCASes(inputCas1);
      assertFalse(iter.hasNext());

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    Type t = type.getType(element.getParent());
    for (List<RuleElementMatch> eachList : list) {
      for (RuleElementMatch each : eachList) {
        List<AnnotationFS> matched = each.getTextsMatched();
        for (AnnotationFS annotationFS : matched) {
          FeatureStructure createFS = cas.createFS(t);
          copyFeatures(annotationFS, createFS, cas);
          if (createFS instanceof AnnotationFS) {
            stream.addAnnotation((AnnotationFS) createFS, match);
          }
          cas.addFsToIndexes(createFS);

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      if (newFeature != null) {
        if (feature.getRange().isPrimitive()) {
          String value = oldFS.getFeatureValueAsString(newFeature);
          newFS.setFeatureValueFromString(newFeature, value);
        } else {
          FeatureStructure value = oldFS.getFeatureValue(feature);
          newFS.setFeatureValue(newFeature, value);
        }
      }
    }
  }

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    FSIterator<AnnotationFS> iterator = cas.getAnnotationIndex(type).iterator(newWindow);
    if (!iterator.isValid()) {
      iterator.moveToLast();
    }
    while (iterator.isValid()) {
      FeatureStructure fs = iterator.get();
      if (fs instanceof AnnotationFS) {
        AnnotationFS a = (AnnotationFS) fs;
        if (a.getEnd() >= window.getEnd() && a.getBegin() <= window.getBegin()) {
          result.add(a);
        }

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  public List<AnnotationFS> getAllofType(Type type) {
    List<AnnotationFS> result = new ArrayList<AnnotationFS>();
    FSIterator<AnnotationFS> iterator = cas.getAnnotationIndex(type).iterator();
    while (iterator.isValid()) {
      FeatureStructure featureStructure = iterator.get();
      result.add((AnnotationFS) featureStructure);
      iterator.moveToNext();
    }
    return result;
  }

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    FSIterator<FeatureStructure> it1 = c1.getIndexRepository().getAllIndexedFS(c1.getTypeSystem().getTopType());
    FSIterator<FeatureStructure> it2 = c2.getIndexRepository().getAllIndexedFS(c2.getTypeSystem().getTopType());
    while (it1.isValid()) {
      Assert.assertTrue(it2.isValid());


      FeatureStructure fs1 = it1.get();
      FeatureStructure fs2 = it2.get();
      assertEquals(fs1, fs2, visited);


      it1.moveToNext();
      it2.moveToNext();
    }

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            assertEquals(arrayFS1.get(j), arrayFS2.get(j), visited);
          }
        }
      } else // single feature value
      {
        FeatureStructure fsVal1 = fs1.getFeatureValue(feat1);
        FeatureStructure fsVal2 = fs2.getFeatureValue(feat2);
        assertEquals(fsVal1, fsVal2, visited);
      }
    }
  }

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