Package org.apache.commons.math3.analysis.function

Examples of org.apache.commons.math3.analysis.function.Log

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    for (SiteWithPolynomial site : sites) {
     
      List<SiteWithPolynomial> nearestSites =
          nearestSiteMap.get(site);
     
      RealVector vector = new ArrayRealVector(SITES_FOR_APPROX);
      RealMatrix matrix = new Array2DRowRealMatrix(
          SITES_FOR_APPROX, DefaultPolynomial.NUM_COEFFS);
     
      for (int row = 0; row < SITES_FOR_APPROX; row++) {
        SiteWithPolynomial nearSite = nearestSites.get(row);
        DefaultPolynomial.populateMatrix(matrix, row, nearSite.pos.x, nearSite.pos.z);
        vector.setEntry(row, nearSite.pos.y);
      }
     
      QRDecomposition qr = new QRDecomposition(matrix);
      RealVector solution = qr.getSolver().solve(vector);
       
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    /**
     * @return a comparator for sorting the optima.
     */
    private Comparator<PointVectorValuePair> getPairComparator() {
        return new Comparator<PointVectorValuePair>() {
            private final RealVector target = new ArrayRealVector(optimizer.getTarget(), false);
            private final RealMatrix weight = optimizer.getWeight();

            public int compare(final PointVectorValuePair o1,
                               final PointVectorValuePair o2) {
                if (o1 == null) {
                    return (o2 == null) ? 0 : 1;
                } else if (o2 == null) {
                    return -1;
                }
                return Double.compare(weightedResidual(o1),
                                      weightedResidual(o2));
            }

            private double weightedResidual(final PointVectorValuePair pv) {
                final RealVector v = new ArrayRealVector(pv.getValueRef(), false);
                final RealVector r = target.subtract(v);
                return r.dotProduct(weight.operate(r));
            }
        };
    }
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     * @param matrix matrix with columns representing variables to correlate
     * @return correlation matrix
     */
    public RealMatrix computeCorrelationMatrix(final RealMatrix matrix) {
        int nVars = matrix.getColumnDimension();
        RealMatrix outMatrix = new BlockRealMatrix(nVars, nVars);
        for (int i = 0; i < nVars; i++) {
            for (int j = 0; j < i; j++) {
                double corr = correlation(matrix.getColumn(i), matrix.getColumn(j));
                outMatrix.setEntry(i, j, corr);
                outMatrix.setEntry(j, i, corr);
            }
            outMatrix.setEntry(i, i, 1d);
        }
        return outMatrix;
    }
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     *
     * @param matrix matrix with columns representing variables to correlate
     * @return correlation matrix
     */
    public RealMatrix computeCorrelationMatrix(final double[][] matrix) {
       return computeCorrelationMatrix(new BlockRealMatrix(matrix));
    }
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        // Compute transpose(J)J.
        final RealMatrix jTj = j.transpose().multiply(j);

        // Compute the covariances matrix.
        final DecompositionSolver solver
            = new QRDecomposition(jTj, threshold).getSolver();
        return solver.getInverse().getData();
    }
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     * Creates a diagonal weight matrix.
     *
     * @param weight List of the values of the diagonal.
     */
    public Weight(double[] weight) {
        weightMatrix = new DiagonalMatrix(weight);
    }
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     * @return the square-root of the weight matrix.
     */
    private RealMatrix squareRoot(RealMatrix m) {
        if (m instanceof DiagonalMatrix) {
            final int dim = m.getRowDimension();
            final RealMatrix sqrtM = new DiagonalMatrix(dim);
            for (int i = 0; i < dim; i++) {
                sqrtM.setEntry(i, i, FastMath.sqrt(m.getEntry(i, i)));
            }
            return sqrtM;
        } else {
            final EigenDecomposition dec = new EigenDecomposition(m);
            return dec.getSquareRoot();
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     * Creates a diagonal weight matrix.
     *
     * @param weight List of the values of the diagonal.
     */
    public Weight(double[] weight) {
        weightMatrix = new DiagonalMatrix(weight);
    }
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     * Creates a diagonal weight matrix.
     *
     * @param weight List of the values of the diagonal.
     */
    public Weight(double[] weight) {
        weightMatrix = new DiagonalMatrix(weight);
    }
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            for (int i = 0; i < dim; i++) {
                sqrtM.setEntry(i, i, FastMath.sqrt(m.getEntry(i, i)));
            }
            return sqrtM;
        } else {
            final EigenDecomposition dec = new EigenDecomposition(m);
            return dec.getSquareRoot();
        }
    }
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Related Classes of org.apache.commons.math3.analysis.function.Log

  • org.apache.commons.math3.analysis.differentiation.DerivativeStructure
  • org.apache.commons.math3.analysis.differentiation.MultivariateDifferentiableVectorFunction
  • org.apache.commons.math3.analysis.function.HarmonicOscillator
  • org.apache.commons.math3.analysis.function.Sin
  • org.apache.commons.math3.analysis.function.Sinc
  • org.apache.commons.math3.analysis.FunctionUtilsTest
  • org.apache.commons.math3.analysis.integration.gauss.LegendreHighPrecisionTest
  • org.apache.commons.math3.analysis.integration.gauss.LegendreTest
  • org.apache.commons.math3.analysis.MultivariateFunction
  • org.apache.commons.math3.analysis.QuinticFunction
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