Package org.apache.commons.math.random

Examples of org.apache.commons.math.random.RandomDataImpl


    public void testWithInitialCapacity() {
       
        ResizableDoubleArray eDA2 = new ResizableDoubleArray(2);
        assertEquals("Initial number of elements should be 0", 0, eDA2.getNumElements());
       
        RandomData randomData = new RandomDataImpl();
        int iterations = randomData.nextInt(100, 1000);
       
        for( int i = 0; i < iterations; i++) {
            eDA2.addElement( i );
        }
       
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    public void testWithInitialCapacityAndExpansionFactor() {
       
        ResizableDoubleArray eDA3 = new ResizableDoubleArray(3, 3.0f, 3.5f);
        assertEquals("Initial number of elements should be 0", 0, eDA3.getNumElements() );
       
        RandomData randomData = new RandomDataImpl();
        int iterations = randomData.nextInt(100, 3000);
       
        for( int i = 0; i < iterations; i++) {
            eDA3.addElement( i );
        }
       
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        double[] test1 = {5,4,3,2,1};
        double[] test2 = {5,2,1,3,4,0};
        double[] test3 = {1};
        int[] testi = null;
        double[] test4 = null;
        RandomData rd = new RandomDataImpl();
        tstGetSortedValues(test1);
        tstGetSortedValues(test2);
        tstGetSortedValues(test3);
        for (int i = 0; i < 10; i++) {
            testi = rd.nextPermutation(10,6);
            test4 = new double[6];
            for (int j = 0; j < testi.length; j++) {
                test4[j] = (double) testi[j];
            }
            tstGetSortedValues(test4);
        }
        for (int i = 0; i < 10; i++) {
            testi = rd.nextPermutation(10,5);
            test4 = new double[5];
            for (int j = 0; j < testi.length; j++) {
                test4[j] = (double) testi[j];
            }
            tstGetSortedValues(test4);
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        assertEquals("Q1",1,u.getPercentile(25),10E-12);
        assertEquals("Q3",1,u.getPercentile(75),10E-12);
        assertEquals("Q2",1,u.getPercentile(50),10E-12);
       
        u.clear();
        RandomData rd = new RandomDataImpl();
        int[] testi = rd.nextPermutation(100,100); // will contain 0-99
        for (int j = 0; j < testi.length; j++) {
            u.addValue((double) testi[j])//OK, laugh at me for the cast
        }
        for (int i = 1; i < 100; i++) {
            assertEquals("percentile " + i,
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    FragmentPenalty fragmentPenalty = new PowerFragmentPenalty(power,powerCoefficient);
    //define partition prior
    FragmentPartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    common.TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,poisson);
    //initial jumping weights
    double[] initJumpWeight = new double[n];
    java.util.Arrays.fill(initJumpWeight, 10);
    //------------------------------------------------------------------------------------
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public class Test {
  public static void main(String[] args) throws MathException {
    int[][] grid = new int[5][5];
    double[][] data = new double[5][5];
    RandomGenerator rg = new Well44497b(20111013);
    RandomDataImpl rng = new RandomDataImpl(rg);
    initializeGrid2(grid);
    initializeData(data, rng);
    printGrid(grid);
//    System.out.println(rng.nextInt(0, 4));
//    System.out.println(rng.nextInt(0, 4));
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public class RunMCMC {
  public static void main(String[] args){
    //-------------- random number generator -----------------
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    //--------------- initial data points ----------------
   
    //-----initial currentPartition and proposedPartition---------
   
    //partition prior
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    //define partition prior
//    PartitionPrior partitionPrior = new DistPartitionPrior(locs,3,fragmentPenalty,sizePenalty);
    PartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,1);
    //initial jumping weights
    double[] initJumpWeight = new double[n];
    java.util.Arrays.fill(initJumpWeight, 10);
    double variance = 0.1;
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    FragmentPenalty fragmentPenalty = new PowerFragmentPenalty(power,powerCoefficient);
    //define partition prior
    FragmentPartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    common.TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,poisson);
    //initial jumping weights
    double[] initJumpWeight = new double[n];
    java.util.Arrays.fill(initJumpWeight, 10);
    //------------------------------------------------------------------------------------
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    FragmentPenalty fragmentPenalty = new PowerFragmentPenalty(power,powerCoefficient);
    //define partition prior
    FragmentPartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    common.TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,poisson);
    //initial jumping weights
    double[] initJumpWeight = new double[n];
    java.util.Arrays.fill(initJumpWeight, 10);
    //------------------------------------------------------------------------------------
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