Package org.apache.airavata.xbaya.graph

Examples of org.apache.airavata.xbaya.graph.DataPort


            // propagate to the connected ports.
            Kind kind = getKind();
            for (DataEdge edge : getEdges()) {
                if (kind == Kind.DATA_IN) {
                    DataPort fromPort = edge.getFromPort();
                    fromPort.copyType(this);
                } else if (kind == Kind.DATA_OUT) {
                    DataPort toPort = edge.getToPort();
                    toPort.copyType(this);
                } else {
                    throw new XBayaRuntimeException();
                }
            }
        }
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            }
        }
        // none found, so make a new one.
        DynamicComponentPort comPort = new DynamicComponentPort(getComponent());
        getComponent().addInputPort(comPort);
        DataPort port = comPort.createPort();
        ((DynamicPort) port).setNode(this);
        this.addInputPort(port);

        return port;
    }
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        List<DataPort> inputPorts = this.getInputPorts();
        if (inputPorts.size() == 1) {
            // This is the initial port, so leave it alone
            return;
        }
        DataPort portToBeRemoved = null;
        for (DataPort dataPort : inputPorts) {
            if (null == dataPort.getFromNode()) {
                getComponent().removeInputPort((DynamicComponentPort) dataPort.getComponentPort());
                portToBeRemoved = dataPort;
                break;
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        List<DataEdge> edges = getEdges();
        QName parameterType = super.getParameterType();
        if (parameterType == null && getEdges().size() > 0) {
            // This happens when the graph XML doesn't have parameterType.
            DataEdge edge = edges.get(0);
            DataPort toPort = edge.getToPort();
            parameterType = toPort.getType();
        }
        return parameterType;
    }
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        super.edgeWasAdded(edge);

        // TODO organize this.
        if (edge instanceof DataEdge) {
            DataEdge dataEdge = (DataEdge) edge;
            DataPort toPort = dataEdge.getToPort();
            QName toType = toPort.getType();

            List<DataEdge> edges = getEdges();
            if (edges.size() == 1) {
                // The first edge.
                setParameterType(toType);
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        }
        if (node.getOutputPorts().size() != 1) {
            throw new GraphException("Number of out ports in WS node " + node.getName() + "is invalid:"
                    + node.getOutputPorts().size());
        }
        DataPort outputPort = node.getOutputPort(0);

        WSComponent component = node.getComponent();
        String inputPartName = component.getInputPartName();
        String inputTypeName = component.getInputTypeName();

        XmlElement complexType = extensions.addElement(scuflNS, "complextype");
        complexType.addAttribute("optional", "false");
        complexType.addAttribute("unbounded", "false");
        complexType.addAttribute("typename", inputTypeName);

        String spliterName = inputPartName;
        complexType.addAttribute("name", spliterName);
        complexType.addAttribute("qname", inputName.toString());

        XmlElement element = complexType.addElement(scuflNS, "elements");
        for (DataPort port : inputPorts) {
            if ("http://www.w3.org/2001/XMLSchema".equals(port.getType().getNamespaceURI())) {
                XmlElement baseType = element.addElement(scuflNS, "basetype");
                baseType.addAttribute("optional", "false");
                baseType.addAttribute("unbounded", "false");
                baseType.addAttribute("typename", port.getType().getLocalPart());
                baseType.addAttribute("name", port.getName());
                baseType.addAttribute("qname", inputTypeName + "&gt;" + port.getName());

            }
            // all the sources are written here
            // the links from input nodes to the spiters are done here
            // links from the from node output splitter to the this service's
            // inputsplitter is done here

            if (port.getFromNode() instanceof InputNode) {
                XmlElement source = builder.newFragment(scuflNS, "source");
                source.addAttribute("name", port.getFromNode().getID());
                if (!sourceExist(port.getFromNode().getID())) {
                    this.sources.put(port.getFromNode().getID(), source);
                }
                XmlElement link = builder.newFragment(scuflNS, "link");
                link.addAttribute("source", port.getFromNode().getID());
                link.addAttribute("sink", getValidName(node) + "InputMessagePartXML:" + port.getName());
                this.links.add(link);

            } else if (port.getFromNode() instanceof WSNode) {
                XmlElement link = builder.newFragment(scuflNS, "link");
                if (port.getFromNode().getOutputPorts().size() != 1) {
                    throw new GraphException("Number of out ports in from WS node " + port.getFromNode().getName()
                            + "is invalid:" + node.getOutputPorts().size());
                }
                link.addAttribute("source", getValidName((WSNode) port.getFromNode()) + "OutputMessagePartXML:"
                        + port.getFromNode().getOutputPort(0).getName());
                link.addAttribute("sink", getValidName(node) + "InputMessagePartXML:" + port.getName());
                this.links.add(link);
            } else {
                throw new GraphException("Unhandled from node type:" + port.getFromNode() + " for node"
                        + node.getName());
            }
        }

        // link from the spliter to the service

        XmlElement link = builder.newFragment(scuflNS, "link");
        link.addAttribute("source", getValidName(node) + "InputMessagePartXML:output");
        link.addAttribute("sink", getValidName(node) + ":" + spliterName);
        this.links.add(link);

        // link from service out to the ouput spliter

        link = builder.newFragment(scuflNS, "link");
        link.addAttribute("source", getValidName(node) + ":" + node.getComponent().getOutputPartName());
        link.addAttribute("sink", getValidName(node) + "OutputMessagePartXML:input");
        this.links.add(link);

        // /outspiltor
        XmlElement outProcessor = scufl.addElement(scuflNS, "processor");
        outProcessor.addAttribute("name", getValidName(node) + "OutputMessagePartXML");
        XmlElement outLocal = outProcessor.addElement(scuflNS, "local");
        outLocal.addChild(0, "org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter");
        XmlElement outExtensions = outLocal.addElement(scuflNS, "extensions");
        XmlElement outComplextype = outExtensions.addElement(scuflNS, "complextype");
        outComplextype.addAttribute("optional", "false");
        outComplextype.addAttribute("unbounded", "false");
        outComplextype.addAttribute("typename", component.getOutputTypeName());
        outComplextype.addAttribute("name", component.getOutputPartName());
        QName outputName = getOutputElementName(node);
        if (null == outputName) {
            throw new GraphException("No Valid output type found for WS Node" + node.getName());
        }
        outComplextype.addAttribute("qname", outputName.toString());
        XmlElement elements = outComplextype.addElement(scuflNS, "elements");
        XmlElement outBaseType = elements.addElement(scuflNS, "basetype");
        outBaseType.addAttribute("optional", "false");
        outBaseType.addAttribute("unbounded", "false");

        outBaseType.addAttribute("typename", outputPort.getType().getLocalPart());
        String Z = component.getOutputPort(0).getName();
        outBaseType.addAttribute("name", Z);

        outBaseType.addAttribute("qname", component.getOutputTypeName() + "&gt;" + Z);

        List<DataPort> outputPorts = node.getOutputPorts();
        for (DataPort port : outputPorts) {
            List<Node> toNodes = port.getToNodes();
            for (Node toNode : toNodes) {
                if (toNode instanceof OutputNode) {
                    if ("http://www.w3.org/2001/XMLSchema".equals(port.getType().getNamespaceURI())) {
                        XmlElement sink = builder.newFragment(scuflNS, "sink");
                        sink.addAttribute("name", toNode.getID());
                        sinks.add(sink);
                        link = builder.newFragment(scuflNS, "link");
                        link.addAttribute("source", getValidName(node) + "OutputMessagePartXML:" + outputPort.getName());
                        link.addAttribute("sink", toNode.getID());
                        this.links.add(link);
                    }
                }
            }
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     * Adds additional input port.
     */
    public void addInputPort() {
        EndifComponent component = getComponent();
        ComponentDataPort input = component.getInputPort();
        DataPort port = input.createPort();
        addInputPort(port);
    }
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     * @throws GraphException
     */
    public void removeInputPort() throws GraphException {
        List<DataPort> inputPorts = getInputPorts();
        // Remove the last one.
        DataPort inputPort = inputPorts.get(inputPorts.size() - 1);
        removeInputPort(inputPort);
    }
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     * Adds additional output port.
     */
    public void addOutputPort() {
        EndifComponent component = getComponent();
        ComponentDataPort outputPort = component.getOutputPort();
        DataPort port = outputPort.createPort();
        addOutputPort(port);
    }
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     * @throws GraphException
     */
    public void removeOutputPort() throws GraphException {
        List<DataPort> outputPorts = getOutputPorts();
        // Remove the last one.
        DataPort outputPort = outputPorts.get(outputPorts.size() - 1);
        removeOutputPort(outputPort);
    }
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