Package org.apache.airavata.registry.api.workflow

Examples of org.apache.airavata.registry.api.workflow.WorkflowExecution

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  public void updateWorkflowNodeStatus(String workflowInstanceId,
      String nodeId, State status) throws RegistryException {
        if (provenanceRegistry != null){
            provenanceRegistry.updateWorkflowNodeStatus(workflowInstanceId, nodeId, status);
        }else {
            updateWorkflowNodeStatus(new WorkflowInstanceNode(new WorkflowExecution(workflowInstanceId, workflowInstanceId), nodeId), status);
        }

  }
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    if (!isWorkflowInstanceNodePresent(id, nodeId)){
      throw new WorkflowInstanceNodeDoesNotExistsException(id, nodeId);
    }
    WorkflowDataResource workflowInstance = jpa.getWorker().getWorkflowInstance(id);
    NodeDataResource nodeData = workflowInstance.getNodeData(nodeId);
    return new NodeExecutionStatus(new WorkflowInstanceNode(new WorkflowExecution(workflowInstance.getExperimentID(), workflowInstance.getWorkflowInstanceID()), nodeData.getNodeID()), nodeData.getStatus()==null?null:State.valueOf(nodeData.getStatus()),nodeData.getLastUpdateTime());
  }
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        if (!isWorkflowInstanceExists(workflowInstanceId,true)){
      throw new WorkflowInstanceDoesNotExistsException(workflowInstanceId);
    }
    try{
            WorkflowDataResource resource = jpa.getWorker().getWorkflowInstance(workflowInstanceId);
            WorkflowExecution workflowInstance = new WorkflowExecution(resource.getExperimentID(), resource.getWorkflowInstanceID());
            workflowInstance.setTemplateName(resource.getTemplateName());
            WorkflowExecutionData workflowInstanceData = new WorkflowExecutionDataImpl(null, workflowInstance, new WorkflowExecutionStatus(workflowInstance, resource.getStatus()==null? null:State.valueOf(resource.getStatus()),resource.getLastUpdatedTime()), null);
            List<NodeDataResource> nodeData = resource.getNodeData();
            for (NodeDataResource nodeDataResource : nodeData) {
                workflowInstanceData.getNodeDataList().add(getWorkflowInstanceNodeData(workflowInstanceId, nodeDataResource.getNodeID()));
            }
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        }
        if (!isWorkflowInstanceNodePresent(workflowInstanceId, nodeId)){
      throw new WorkflowInstanceNodeDoesNotExistsException(workflowInstanceId,nodeId);
    }
    NodeDataResource nodeData = jpa.getWorker().getWorkflowInstance(workflowInstanceId).getNodeData(nodeId);
    NodeExecutionData data = new NodeExecutionData(new WorkflowInstanceNode(new WorkflowExecution(nodeData.getWorkflowDataResource().getExperimentID(),nodeData.getWorkflowDataResource().getWorkflowInstanceID()),nodeData.getNodeID()));
    data.setInput(nodeData.getInputs());
    data.setOutput(nodeData.getOutputs());
        data.setType(WorkflowNodeType.getType(nodeData.getNodeType()).getNodeType());
    //TODO setup status
    return data;
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        keywords[i] = ((InputNode) node).getName();
        values[i] = ((InputNode) node).getDefaultValue();
                //Saving workflow input Node data before running the workflow
                WorkflowNodeType workflowNodeType = new WorkflowNodeType();
                workflowNodeType.setNodeType(WorkflowNodeType.WorkflowNode.INPUTNODE);
                WorkflowInstanceNode workflowInstanceNode = new WorkflowInstanceNode(new WorkflowExecution(getConfig().getTopic(),
                        getConfig().getTopic()), node.getID());
                this.getConfig().getConfiguration().getAiravataAPI().getProvenanceManager().setWorkflowInstanceNodeInput(workflowInstanceNode, keywords[i] + "=" + (String) values[i]);
                this.getConfig().getConfiguration().getAiravataAPI().getProvenanceManager().setWorkflowNodeType(workflowInstanceNode, workflowNodeType);
      }
      this.config.getNotifier().workflowStarted(values, keywords);
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            ((OutputNode) node).setDescription(val.toString());
          }
                    // Saving output Node data in to database
                    WorkflowNodeType workflowNodeType = new WorkflowNodeType();
                    workflowNodeType.setNodeType(WorkflowNodeType.WorkflowNode.OUTPUTNODE);
                    WorkflowInstanceNode workflowInstanceNode = new WorkflowInstanceNode(new WorkflowExecution(config.getTopic(), config.getTopic()), node.getID());
                    String portname = node.getName();
                    String portValue = ((OutputNode) node).getDescription();
                    this.getConfig().getConfiguration().getAiravataAPI().getProvenanceManager().setWorkflowInstanceNodeOutput(workflowInstanceNode, portname + "=" + portValue);
                    this.getConfig().getConfiguration().getAiravataAPI().getProvenanceManager().setWorkflowNodeType(workflowInstanceNode, workflowNodeType);
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    ExperimentResource experiment = jpa.getWorker().getExperiment(experimentId);
    ExperimentDataResource data = experiment.getData();
    List<WorkflowExecution> result=new ArrayList<WorkflowExecution>();
    List<WorkflowDataResource> workflowInstances = data.getWorkflowInstances();
    for (WorkflowDataResource resource : workflowInstances) {
      WorkflowExecution workflowInstance = new WorkflowExecution(resource.getExperimentID(), resource.getWorkflowInstanceID());
      workflowInstance.setTemplateName(resource.getTemplateName());
      result.add(workflowInstance);
    }
    return result;
  }
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        }
        if (!isWorkflowInstanceExists(instanceId, true)){
      throw new WorkflowInstanceDoesNotExistsException(instanceId);
    }
    WorkflowDataResource wi = jpa.getWorker().getWorkflowInstance(instanceId);
    return new WorkflowExecutionStatus(new WorkflowExecution(wi.getExperimentID(),wi.getWorkflowInstanceID()),wi.getStatus()==null?null:State.valueOf(wi.getStatus()),wi.getLastUpdatedTime());
  }
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  @Override
  public void updateWorkflowNodeStatus(NodeExecutionStatus workflowStatusNode) throws RegistryException {
        if (provenanceRegistry != null){
            provenanceRegistry.updateWorkflowNodeStatus(workflowStatusNode);
        }else {
            WorkflowExecution workflowInstance = workflowStatusNode.getWorkflowInstanceNode().getWorkflowInstance();
            String nodeId = workflowStatusNode.getWorkflowInstanceNode().getNodeId();
            if (!isWorkflowInstanceNodePresent(workflowInstance.getWorkflowExecutionId(), nodeId, true)){
                throw new WorkflowInstanceNodeDoesNotExistsException(workflowInstance.getWorkflowExecutionId(), nodeId);
            }
            NodeDataResource nodeData = jpa.getWorker().getWorkflowInstance(workflowInstance.getWorkflowExecutionId()).getNodeData(nodeId);
            nodeData.setStatus(workflowStatusNode.getExecutionStatus().toString());
            Timestamp t = new Timestamp(workflowStatusNode.getStatusUpdateTime().getTime());
            if (workflowStatusNode.getExecutionStatus()==State.STARTED){
                nodeData.setStartTime(t);
            }
            nodeData.setLastUpdateTime(t);
            nodeData.save();
            //Each time node status is updated the the time of update for the workflow status is going to be the same
            WorkflowExecutionStatus currentWorkflowInstanceStatus = getWorkflowInstanceStatus(workflowInstance.getWorkflowExecutionId());
            updateWorkflowInstanceStatus(new WorkflowExecutionStatus(workflowInstance, currentWorkflowInstanceStatus.getExecutionStatus(), t));
        }
  }
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  public void updateWorkflowNodeStatus(String workflowInstanceId,
      String nodeId, State status) throws RegistryException {
        if (provenanceRegistry != null){
            provenanceRegistry.updateWorkflowNodeStatus(workflowInstanceId, nodeId, status);
        }else {
            updateWorkflowNodeStatus(new WorkflowInstanceNode(new WorkflowExecution(workflowInstanceId, workflowInstanceId), nodeId), status);
        }

  }
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Related Classes of org.apache.airavata.registry.api.workflow.WorkflowExecution

  • org.apache.airavata.client.impl.ProvenanceManagerImpl
  • org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
  • org.apache.airavata.registry.api.impl.AiravataJCRRegistry
  • org.apache.airavata.xbaya.interpretor.WorkflowInterpreter
  • org.apache.airavata.xbaya.provenance.ProvenanceReader
  • org.apache.airavata.xbaya.provenance.ProvenanceWrite
  • org.apache.airavata.xbaya.provenance.WorkflowNodeStatusUpdater
  • org.apache.airavata.xbaya.provenance.WorkflowStatusUpdater
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