Package org.apache.airavata.gfac.context

Examples of org.apache.airavata.gfac.context.ApplicationContext

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      URL resource = GramProviderTest.class.getClassLoader().getResource("gfac-config.xml");
        GFacConfiguration gFacConfiguration = GFacConfiguration.create(new File(resource.getPath()),null,null);
//        gFacConfiguration.s
        //have to set InFlwo Handlers and outFlowHandlers
        ApplicationContext applicationContext = new ApplicationContext();
        HostDescription host = new HostDescription(SSHHostType.type);
        host.getType().setHostName("bigred");
        host.getType().setHostAddress("bigred2.uits.iu.edu");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoSSH");
        app.setApplicationName(name);

        /*
           * Use bat file if it is compiled on Windows
           */
        if (SystemUtils.IS_OS_WINDOWS) {
            URL url = this.getClass().getClassLoader().getResource("echo.bat");
            app.setExecutableLocation(url.getFile());
        } else {
            //for unix and Mac
            app.setExecutableLocation("/bin/echo");
        }

        /*
         * Job location
        */
        String tempDir = "/tmp";
        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");

        tempDir = tempDir + File.separator
                + "EchoSSH" + "_" + date + "_" + UUID.randomUUID();

        app.setScratchWorkingDirectory(tempDir);
        app.setStaticWorkingDirectory(tempDir);
        app.setInputDataDirectory(tempDir + File.separator + "input");
        app.setOutputDataDirectory(tempDir + File.separator + "output");
        app.setStandardOutput(tempDir + File.separator + "echo.stdout");
        app.setStandardError(tempDir + File.separator + "echo.stderr");

        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("EchoSSH");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);

        // Add security context
        jobExecutionContext.addSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT, getSecurityContext());
        /*
        * Host
        */
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
    ((StringParameterType)echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
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        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        // Adding security context
        jobExecutionContext.addSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT, getSecurityContext());
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(appDesc);
        applicationContext.setHostDescription(host);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType)echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
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  @Test
  public void testSerialJSDLWithStdout() throws Exception{

    JobTypeType jobType = JobTypeType.Factory.newInstance();
    jobType.set(JobTypeType.SERIAL);
    ApplicationContext appContext = getApplicationContext();
    appContext.setApplicationDeploymentDescription(getApplicationDesc(jobType, true));
    jobExecutionContext.setApplicationContext(appContext);

    JobDefinitionDocument jobDefDoc = JSDLGenerator.buildJSDLInstance(jobExecutionContext);
   
    assertTrue (jobDefDoc.getJobDefinition().getJobDescription().getApplication().toString().contains("/bin/cat"));
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  @Test
  public void testSerialJSDLWithoutStdout() throws Exception{

    JobTypeType jobType = JobTypeType.Factory.newInstance();
    jobType.set(JobTypeType.SERIAL);
    ApplicationContext appContext = getApplicationContext();
    appContext.setApplicationDeploymentDescription(getApplicationDesc(jobType, false));
    jobExecutionContext.setApplicationContext(appContext);

    JobDefinitionDocument jobDefDoc = JSDLGenerator.buildJSDLInstance(jobExecutionContext);
   
    assertTrue (jobDefDoc.getJobDefinition().getJobDescription().getApplication().toString().contains("/bin/cat"));
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  @Test
  public void testMPIJSDL() throws Exception{
   
    JobTypeType jobType = JobTypeType.Factory.newInstance();
    jobType.set(JobTypeType.MPI);
    ApplicationContext appContext = getApplicationContext();
    appContext.setApplicationDeploymentDescription(getApplicationDesc(jobType, true));
    jobExecutionContext.setApplicationContext(appContext);
   
    JobDefinitionDocument jobDefDoc = JSDLGenerator.buildJSDLInstance(jobExecutionContext);
   
    assertTrue (jobDefDoc.getJobDefinition().getJobDescription().getApplication().toString().contains("/bin/cat"));
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    return gFacConfiguration;
  }
 
 
  protected ApplicationContext getApplicationContext() {
    ApplicationContext applicationContext = new ApplicationContext();
    applicationContext.setHostDescription(getHostDesc());
   
    applicationContext.setServiceDescription(getServiceDesc());
    return applicationContext;
  }
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        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
        applicationContext.setApplicationDeploymentDescription(ec2Desc);
        applicationContext.setHostDescription(host);

        AmazonSecurityContext amazonSecurityContext =
                new AmazonSecurityContext(userName, accessKey, secretKey, instanceId);
        jobExecutionContext.addSecurityContext(AmazonSecurityContext.AMAZON_SECURITY_CONTEXT, amazonSecurityContext);
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            jobExecutionContext.setProperty(Constants.PROP_TOPIC, this.configuration.getTopic());
            jobExecutionContext.setProperty(Constants.PROP_BROKER_URL, this.configuration.getBrokerURL().toASCIIString());
            jobExecutionContext.setProperty(Constants.PROP_WORKFLOW_INSTANCE_ID, this.configuration.getTopic());


            ApplicationContext applicationContext = new ApplicationContext();
            applicationContext.setApplicationDeploymentDescription(applicationDescription);
            applicationContext.setHostDescription(registeredHost);
            applicationContext.setServiceDescription(serviceDescription);

            jobExecutionContext.setApplicationContext(applicationContext);

            jobExecutionContext.setOutMessageContext(getOutParameters(serviceDescription));
            jobExecutionContext.setInMessageContext(new MessageContext(actualParameters));
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        URL resource = this.getClass().getClassLoader().getResource("gfac-config.xml");
        File configFile = new File(resource.getPath());
        GFacConfiguration gFacConfiguration = GFacConfiguration.create(configFile, null, null);
        //have to set InFlwo Handlers and outFlowHandlers
        ApplicationContext applicationContext = new ApplicationContext();
        HostDescription host = new HostDescription();
        host.getType().setHostName("localhost");
        host.getType().setHostAddress("localhost");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoLocal");
        app.setApplicationName(name);

        /*
           * Use bat file if it is compiled on Windows
           */
        if (SystemUtils.IS_OS_WINDOWS) {
            URL url = this.getClass().getClassLoader().getResource("echo.bat");
            app.setExecutableLocation(url.getFile());
        } else {
            //for unix and Mac
            app.setExecutableLocation("/bin/echo");
        }

        /*
           * Default tmp location
           */
        String tempDir = System.getProperty("java.io.tmpdir");
        if (tempDir == null) {
            tempDir = "/tmp";
        }

        app.setScratchWorkingDirectory(tempDir);
        app.setStaticWorkingDirectory(tempDir);
        app.setInputDataDirectory(tempDir + File.separator + "input");
        app.setOutputDataDirectory(tempDir + File.separator + "output");
        app.setStandardOutput(tempDir + File.separator + "echo.stdout");
        app.setStandardError(tempDir + File.separator + "echo.stderr");

        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("SimpleEcho");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration, serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);
        /*
        * Host
        */
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();
        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);
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    return GFacConfiguration.create(new File(resource.getPath()), null,
        null);
  }

  protected ApplicationContext getApplicationContext() {
    ApplicationContext applicationContext = new ApplicationContext();
    applicationContext.setHostDescription(getHostDesc());
    return applicationContext;
  }
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Related Classes of org.apache.airavata.gfac.context.ApplicationContext

  • org.apache.airavata.core.gfac.services.impl.AbstractBESTest
  • org.apache.airavata.core.gfac.services.impl.BESParallelJobTest
  • org.apache.airavata.core.gfac.services.impl.BESProviderTest
  • org.apache.airavata.core.gfac.services.impl.BigRed2Test
  • org.apache.airavata.core.gfac.services.impl.EC2ProviderTest
  • org.apache.airavata.core.gfac.services.impl.GramProviderTest
  • org.apache.airavata.core.gfac.services.impl.GSISSHProviderTest
  • org.apache.airavata.core.gfac.services.impl.JSDLGeneratorTest
  • org.apache.airavata.core.gfac.services.impl.LocalProviderTest
  • org.apache.airavata.core.gfac.services.impl.ParamChemTest
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