Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ServiceDescription

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        AiravataRegistry2 airavataRegistry = RegPoolUtils.acquireRegistry(context);
        try {
            ApplicationDescription applicationDescription = airavataRegistry.getApplicationDescriptors(serviceName, hostName);
            ApplicationDescriptor applicationDescriptor = DescriptorUtil.createApplicationDescriptor(applicationDescription);
            applicationDescriptor.setHostdescName(hostName);
            ServiceDescription serviceDescription = airavataRegistry.getServiceDescriptor(serviceName);
            ServiceDescriptor serviceDescriptor = DescriptorUtil.createServiceDescriptor(serviceDescription);
            applicationDescriptor.setServiceDescriptor(serviceDescriptor);

            if (applicationDescription != null) {
                Response.ResponseBuilder builder = Response.status(Response.Status.OK);
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            for (String hostName : applicationDeploymentDescriptionMap.keySet()) {
                ApplicationDescription applicationDescription = applicationDeploymentDescriptionMap.get(hostName);
                ApplicationDescriptor applicationDescriptor = DescriptorUtil.createApplicationDescriptor(applicationDescription);
                applicationDescriptor.setHostdescName(hostName);

                ServiceDescription serviceDescription = airavataRegistry.getServiceDescriptor(serviceName);
                ServiceDescriptor serviceDescriptor = DescriptorUtil.createServiceDescriptor(serviceDescription);
                applicationDescriptor.setServiceDescriptor(serviceDescriptor);

                applicationDescriptors[i] = applicationDescriptor;
                i++;
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            int i = 0;
            for (String[] descriptors : applicationDeploymentDescriptionMap.keySet()) {
                ApplicationDescription applicationDescription = applicationDeploymentDescriptionMap.get(descriptors);
                ApplicationDescriptor applicationDescriptor = DescriptorUtil.createApplicationDescriptor(applicationDescription);
                applicationDescriptor.setHostdescName(descriptors[1]);
                ServiceDescription serviceDescription = airavataRegistry.getServiceDescriptor(descriptors[0]);
                if (serviceDescription == null) {
                    Response.ResponseBuilder builder = Response.status(Response.Status.NO_CONTENT);
                    return builder.build();
                }
                ServiceDescriptor serviceDescriptor = DescriptorUtil.createServiceDescriptor(serviceDescription);
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  protected abstract ApplicationDescription getApplicationDesc(
      JobTypeType jobType);

  protected ServiceDescription getServiceDesc(String serviceName) {
    ServiceDescription serv = new ServiceDescription();
    serv.getType().setName(serviceName);
    return serv;
  }
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        /*
        * Service
        */
        ServiceDescription serv = new ServiceDescription();
        List<InputParameterType> inputParameters = new ArrayList<InputParameterType>();
        List<OutputParameterType> outputParameters = new ArrayList<OutputParameterType>();

        serv.getType().setName(serviceName);
        serv.getType().setDescription(serviceName);

        //Creating input parameters
        InputParameterType parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("molecule_id");
        ParameterType parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.STRING);
        parameterType.setName("String");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("geom_mol2");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.URI);
        parameterType.setName("URI");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("toppar_main_tgz");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.URI);
        parameterType.setName("URI");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("toppar_usr_tgz");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.URI);
        parameterType.setName("URI");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("toppar_mol_str");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.URI);
        parameterType.setName("URI");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("molecule_dir_in_tgz");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.URI);
        parameterType.setName("URI");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("GC_UserName");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.STRING);
        parameterType.setName("String");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("GC_ProjectName");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.STRING);
        parameterType.setName("String");
        inputParameters.add(parameter);

        parameter = InputParameterType.Factory.newInstance();
        parameter.setParameterName("GC_WorkflowName");
        parameterType = parameter.addNewParameterType();
        parameterType.setType(DataType.STRING);
        parameterType.setName("String");
        inputParameters.add(parameter);

        //Creating output parameters
        OutputParameterType outputParameter = OutputParameterType.Factory.newInstance();
        outputParameter.setParameterName("opt_freq_input_gjf");
        ParameterType outputParaType = outputParameter.addNewParameterType();
        outputParaType.setType(DataType.URI);
        outputParaType.setName("URI");
        outputParameters.add(outputParameter);

        outputParameter = OutputParameterType.Factory.newInstance();
        outputParameter.setParameterName("charmm_miminized_crd");
        outputParaType = outputParameter.addNewParameterType();
        outputParaType.setType(DataType.URI);
        outputParaType.setName("URI");
        outputParameters.add(outputParameter);

        outputParameter = OutputParameterType.Factory.newInstance();
        outputParameter.setParameterName("step1_log");
        outputParaType = outputParameter.addNewParameterType();
        outputParaType.setType(DataType.URI);
        outputParaType.setName("URI");
        outputParameters.add(outputParameter);

        outputParameter = OutputParameterType.Factory.newInstance();
        outputParameter.setParameterName("molecule_dir_out_tgz");
        outputParaType = outputParameter.addNewParameterType();
        outputParaType.setType(DataType.URI);
        outputParaType.setName("URI");
        outputParameters.add(outputParameter);

        outputParameter = OutputParameterType.Factory.newInstance();
        outputParameter.setParameterName("gcvars");
        outputParaType = outputParameter.addNewParameterType();
        outputParaType.setType(DataType.URI);
        outputParaType.setName("URI");
        outputParameters.add(outputParameter);

        //Setting input and output parameters to serviceDescriptor
        serv.getType().setInputParametersArray(inputParameters.toArray(new InputParameterType[]{}));
        serv.getType().setOutputParametersArray(outputParameters.toArray(new OutputParameterType[]{}));

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        jobExecutionContext.addSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT, context);
        ApplicationContext applicationContext = new ApplicationContext();
        applicationContext.setHostDescription(host);
        applicationContext.setApplicationDeploymentDescription(appDesc);
        jobExecutionContext.setApplicationContext(applicationContext);
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        applicationContext.setApplicationDeploymentDescription(appDesc);

        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("EchoSSH");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        jobExecutionContext.setApplicationContext(applicationContext);

        // Add security context
        jobExecutionContext.addSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT, getSecurityContext());
        /*
 
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        /*
           * Service
           */
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName("SimpleEcho");

        List<InputParameterType> inputList = new ArrayList<InputParameterType>();

        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName("echo_input");
        input.setParameterType(StringParameterType.Factory.newInstance());
        inputList.add(input);

        InputParameterType input1 = InputParameterType.Factory.newInstance();
        input.setParameterName("myinput");
        URIParameterType uriType = URIParameterType.Factory.newInstance();
        uriType.setValue("gsiftp://gridftp1.ls4.tacc.utexas.edu:2811//home1/01437/ogce/gram_20130215.log");
        input.setParameterType(uriType);
        inputList.add(input1);


        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList

                                                                                       .size()]);
        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName("echo_output");
        output.setParameterType(StringParameterType.Factory.newInstance());
        outputList.add(output);

        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);

        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);

        jobExecutionContext = new JobExecutionContext(gFacConfiguration,serv.getType().getName());
        // Adding security context
        jobExecutionContext.addSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT, getSecurityContext());
        ApplicationContext applicationContext = new ApplicationContext();
        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);
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    }

    public static ServiceDescription getServiceDescription(String serviceName, String inputName, String inputType,
                                                           String outputName, String outputType) {
        // Create Service Description
        ServiceDescription serv = new ServiceDescription();
        serv.getType().setName(serviceName);

        InputParameterType input = InputParameterType.Factory.newInstance();
        input.setParameterName(inputName);
        ParameterType parameterType = input.addNewParameterType();
        parameterType.setType(DataType.Enum.forString(inputType));
        parameterType.setName(inputName);
        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
        inputList.add(input);
        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList
                .size()]);

        OutputParameterType output = OutputParameterType.Factory.newInstance();
        output.setParameterName(outputName);
        ParameterType parameterType1 = output.addNewParameterType();
        parameterType1.setType(DataType.Enum.forString(outputType));
        parameterType1.setName(outputName);
        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
        outputList.add(output);
        OutputParameterType[] outputParamList = outputList
                .toArray(new OutputParameterType[outputList.size()]);
        serv.getType().setInputParametersArray(inputParamList);
        serv.getType().setOutputParametersArray(outputParamList);
        return serv;
    }
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    ((UnicoreHostType) host.getType()).setGridFTPEndPointArray(new String[]{gridftpAddress});
    return host;
  }

  protected ServiceDescription getServiceDesc() {
    ServiceDescription serv = new ServiceDescription();
    serv.getType().setName("SimpleCat");

    List<InputParameterType> inputList = new ArrayList<InputParameterType>();
    InputParameterType input = InputParameterType.Factory.newInstance();
    input.setParameterName("echo_input");
    input.setParameterType(StringParameterType.Factory.newInstance());
    inputList.add(input);
    InputParameterType[] inputParamList = inputList
        .toArray(new InputParameterType[inputList.size()]);

    List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
    OutputParameterType output = OutputParameterType.Factory.newInstance();
    output.setParameterName("echo_output");
    output.setParameterType(StringParameterType.Factory.newInstance());
    outputList.add(output);
    OutputParameterType[] outputParamList = outputList
        .toArray(new OutputParameterType[outputList.size()]);

    serv.getType().setInputParametersArray(inputParamList);
    serv.getType().setOutputParametersArray(outputParamList);
   
   
    return serv;
  }
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        this.serviceCreated = serviceCreated;
    }

    public ServiceDescription getServiceDescription() {
        if (serviceDescription == null) {
            serviceDescription = new ServiceDescription();
        }
        return serviceDescription;
    }
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