Examples of OnDiskAtomIterator


Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

        // check that the shadowed column is gone
        SSTableReader sstable = cfs.getSSTables().iterator().next();
        Range keyRange = new Range<RowPosition>(key, sstable.partitioner.getMinimumToken().maxKeyBound());
        SSTableScanner scanner = sstable.getScanner(DataRange.forKeyRange(keyRange));
        OnDiskAtomIterator iter = scanner.next();
        assertEquals(key, iter.getKey());
        assert iter.next() instanceof RangeTombstone;
        assert !iter.hasNext();
    }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

     *  The returned column family won't be thread safe.
     */
    ColumnFamily filterColumnFamily(ColumnFamily cached, QueryFilter filter, int gcBefore)
    {
        ColumnFamily cf = cached.cloneMeShallow(ArrayBackedSortedColumns.factory(), filter.filter.isReversed());
        OnDiskAtomIterator ci = filter.getMemtableColumnIterator(cached, null);
        filter.collateOnDiskAtom(cf, Collections.singletonList(ci), gcBefore);
        // TODO this is necessary because when we collate supercolumns together, we don't check
        // their subcolumns for relevance, so we need to do a second prune post facto here.
        return cf.isSuper() ? removeDeleted(cf, gcBefore) : removeDeletedCF(cf, gcBefore);
    }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

     *  The returned column family won't be thread safe.
     */
    ColumnFamily filterColumnFamily(ColumnFamily cached, QueryFilter filter)
    {
        ColumnFamily cf = cached.cloneMeShallow(ArrayBackedSortedColumns.factory, filter.filter.isReversed());
        OnDiskAtomIterator ci = filter.getColumnFamilyIterator(cached);

        int gcBefore = gcBefore(filter.timestamp);
        filter.collateOnDiskAtom(cf, ci, gcBefore);
        return removeDeletedCF(cf, gcBefore);
    }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

        try
        {
            Tracing.trace("Merging memtable contents");
            for (Memtable memtable : view.memtables)
            {
                OnDiskAtomIterator iter = filter.getMemtableColumnIterator(memtable);
                if (iter != null)
                {
                    iterators.add(iter);
                    temp.delete(iter.getColumnFamily());
                    while (iter.hasNext())
                        temp.addAtom(iter.next());
                }

                container.addAll(temp, HeapAllocator.instance);
                temp.clear();
            }

            // avoid changing the filter columns of the original filter
            // (reduceNameFilter removes columns that are known to be irrelevant)
            NamesQueryFilter namesFilter = (NamesQueryFilter) filter.filter;
            TreeSet<ByteBuffer> filterColumns = new TreeSet<ByteBuffer>(namesFilter.columns);
            QueryFilter reducedFilter = new QueryFilter(filter.key, filter.cfName, namesFilter.withUpdatedColumns(filterColumns), filter.timestamp);

            /* add the SSTables on disk */
            Collections.sort(view.sstables, SSTable.maxTimestampComparator);

            // read sorted sstables
            long mostRecentRowTombstone = Long.MIN_VALUE;
            for (SSTableReader sstable : view.sstables)
            {
                // if we've already seen a row tombstone with a timestamp greater
                // than the most recent update to this sstable, we're done, since the rest of the sstables
                // will also be older
                if (sstable.getMaxTimestamp() < mostRecentRowTombstone)
                    break;

                long currentMaxTs = sstable.getMaxTimestamp();
                reduceNameFilter(reducedFilter, container, currentMaxTs);
                if (((NamesQueryFilter) reducedFilter.filter).columns.isEmpty())
                    break;

                Tracing.trace("Merging data from sstable {}", sstable.descriptor.generation);
                OnDiskAtomIterator iter = reducedFilter.getSSTableColumnIterator(sstable);
                iterators.add(iter);
                if (iter.getColumnFamily() != null)
                {
                    ColumnFamily cf = iter.getColumnFamily();
                    if (cf.isMarkedForDelete())
                        mostRecentRowTombstone = cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt;
                    temp.delete(cf);
                    sstablesIterated++;
                    while (iter.hasNext())
                        temp.addAtom(iter.next());
                }

                container.addAll(temp, HeapAllocator.instance);
                temp.clear();
            }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

        try
        {
            Tracing.trace("Merging memtable tombstones");
            for (Memtable memtable : view.memtables)
            {
                OnDiskAtomIterator iter = filter.getMemtableColumnIterator(memtable);
                if (iter != null)
                {
                    returnCF.delete(iter.getColumnFamily());
                    iterators.add(iter);
                }
            }

            /*
             * We can't eliminate full sstables based on the timestamp of what we've already read like
             * in collectTimeOrderedData, but we still want to eliminate sstable whose maxTimestamp < mostRecentTombstone
             * we've read. We still rely on the sstable ordering by maxTimestamp since if
             *   maxTimestamp_s1 > maxTimestamp_s0,
             * we're guaranteed that s1 cannot have a row tombstone such that
             *   timestamp(tombstone) > maxTimestamp_s0
             * since we necessarily have
             *   timestamp(tombstone) <= maxTimestamp_s1
             * In othere words, iterating in maxTimestamp order allow to do our mostRecentTombstone elimination
             * in one pass, and minimize the number of sstables for which we read a rowTombstone.
             */
            Collections.sort(view.sstables, SSTable.maxTimestampComparator);
            List<SSTableReader> skippedSSTables = null;
            long mostRecentRowTombstone = Long.MIN_VALUE;
            long minTimestamp = Long.MAX_VALUE;
            int nonIntersectingSSTables = 0;

            for (SSTableReader sstable : view.sstables)
            {
                minTimestamp = Math.min(minTimestamp, sstable.getMinTimestamp());
                // if we've already seen a row tombstone with a timestamp greater
                // than the most recent update to this sstable, we can skip it
                if (sstable.getMaxTimestamp() < mostRecentRowTombstone)
                    break;

                if (!filter.shouldInclude(sstable))
                {
                    nonIntersectingSSTables++;
                    // sstable contains no tombstone if maxLocalDeletionTime == Integer.MAX_VALUE, so we can safely skip those entirely
                    if (sstable.getSSTableMetadata().maxLocalDeletionTime != Integer.MAX_VALUE)
                    {
                        if (skippedSSTables == null)
                            skippedSSTables = new ArrayList<SSTableReader>();
                        skippedSSTables.add(sstable);
                    }
                    continue;
                }

                sstable.incrementReadCount();
                OnDiskAtomIterator iter = filter.getSSTableColumnIterator(sstable);
                iterators.add(iter);
                if (iter.getColumnFamily() != null)
                {
                    ColumnFamily cf = iter.getColumnFamily();
                    if (cf.isMarkedForDelete())
                        mostRecentRowTombstone = cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt;

                    returnCF.delete(cf);
                    sstablesIterated++;
                }
            }

            int includedDueToTombstones = 0;
            // Check for row tombstone in the skipped sstables
            if (skippedSSTables != null)
            {
                for (SSTableReader sstable : skippedSSTables)
                {
                    if (sstable.getMaxTimestamp() <= minTimestamp)
                        continue;

                    sstable.incrementReadCount();
                    OnDiskAtomIterator iter = filter.getSSTableColumnIterator(sstable);
                    ColumnFamily cf = iter.getColumnFamily();
                    // we are only interested in row-level tombstones here, and only if markedForDeleteAt is larger than minTimestamp
                    if (cf != null && cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt > minTimestamp)
                    {
                        includedDueToTombstones++;
                        iterators.add(iter);
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

    public OnDiskAtomIterator getColumnFamilyIterator(final DecoratedKey key, final ColumnFamily cf)
    {
        assert cf != null;
        final Iterator<Column> filteredIter = reversed ? cf.reverseIterator(slices) : cf.iterator(slices);

        return new OnDiskAtomIterator()
        {
            public ColumnFamily getColumnFamily()
            {
                return cf;
            }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

    public OnDiskAtomIterator getColumnFamilyIterator(final DecoratedKey key, final ColumnFamily cf)
    {
        assert cf != null;
        final Iterator<Cell> filteredIter = reversed ? cf.reverseIterator(slices) : cf.iterator(slices);

        return new OnDiskAtomIterator()
        {
            public ColumnFamily getColumnFamily()
            {
                return cf;
            }
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

        try
        {
            Tracing.trace("Merging memtable contents");
            for (Memtable memtable : view.memtables)
            {
                OnDiskAtomIterator iter = filter.getMemtableColumnIterator(memtable);
                if (iter != null)
                {
                    iterators.add(iter);
                    container.delete(iter.getColumnFamily());
                    while (iter.hasNext())
                        container.addAtom(iter.next());
                }
            }

            // avoid changing the filter columns of the original filter
            // (reduceNameFilter removes columns that are known to be irrelevant)
            NamesQueryFilter namesFilter = (NamesQueryFilter) filter.filter;
            TreeSet<CellName> filterColumns = new TreeSet<>(namesFilter.columns);
            QueryFilter reducedFilter = new QueryFilter(filter.key, filter.cfName, namesFilter.withUpdatedColumns(filterColumns), filter.timestamp);

            /* add the SSTables on disk */
            Collections.sort(view.sstables, SSTableReader.maxTimestampComparator);

            // read sorted sstables
            long mostRecentRowTombstone = Long.MIN_VALUE;
            for (SSTableReader sstable : view.sstables)
            {
                // if we've already seen a row tombstone with a timestamp greater
                // than the most recent update to this sstable, we're done, since the rest of the sstables
                // will also be older
                if (sstable.getMaxTimestamp() < mostRecentRowTombstone)
                    break;

                long currentMaxTs = sstable.getMaxTimestamp();
                reduceNameFilter(reducedFilter, container, currentMaxTs);
                if (((NamesQueryFilter) reducedFilter.filter).columns.isEmpty())
                    break;

                Tracing.trace("Merging data from sstable {}", sstable.descriptor.generation);
                OnDiskAtomIterator iter = reducedFilter.getSSTableColumnIterator(sstable);
                iterators.add(iter);
                if (iter.getColumnFamily() != null)
                {
                    ColumnFamily cf = iter.getColumnFamily();
                    if (cf.isMarkedForDelete())
                        mostRecentRowTombstone = cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt;
                    container.delete(cf);
                    sstablesIterated++;
                    while (iter.hasNext())
                        container.addAtom(iter.next());
                }
            }

            // we need to distinguish between "there is no data at all for this row" (BF will let us rebuild that efficiently)
            // and "there used to be data, but it's gone now" (we should cache the empty CF so we don't need to rebuild that slower)
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

        try
        {
            Tracing.trace("Merging memtable tombstones");
            for (Memtable memtable : view.memtables)
            {
                OnDiskAtomIterator iter = filter.getMemtableColumnIterator(memtable);
                if (iter != null)
                {
                    returnCF.delete(iter.getColumnFamily());
                    iterators.add(iter);
                }
            }

            /*
             * We can't eliminate full sstables based on the timestamp of what we've already read like
             * in collectTimeOrderedData, but we still want to eliminate sstable whose maxTimestamp < mostRecentTombstone
             * we've read. We still rely on the sstable ordering by maxTimestamp since if
             *   maxTimestamp_s1 > maxTimestamp_s0,
             * we're guaranteed that s1 cannot have a row tombstone such that
             *   timestamp(tombstone) > maxTimestamp_s0
             * since we necessarily have
             *   timestamp(tombstone) <= maxTimestamp_s1
             * In othere words, iterating in maxTimestamp order allow to do our mostRecentTombstone elimination
             * in one pass, and minimize the number of sstables for which we read a rowTombstone.
             */
            Collections.sort(view.sstables, SSTableReader.maxTimestampComparator);
            List<SSTableReader> skippedSSTables = null;
            long mostRecentRowTombstone = Long.MIN_VALUE;
            long minTimestamp = Long.MAX_VALUE;
            int nonIntersectingSSTables = 0;

            for (SSTableReader sstable : view.sstables)
            {
                minTimestamp = Math.min(minTimestamp, sstable.getMinTimestamp());
                // if we've already seen a row tombstone with a timestamp greater
                // than the most recent update to this sstable, we can skip it
                if (sstable.getMaxTimestamp() < mostRecentRowTombstone)
                    break;

                if (!filter.shouldInclude(sstable))
                {
                    nonIntersectingSSTables++;
                    // sstable contains no tombstone if maxLocalDeletionTime == Integer.MAX_VALUE, so we can safely skip those entirely
                    if (sstable.getSSTableMetadata().maxLocalDeletionTime != Integer.MAX_VALUE)
                    {
                        if (skippedSSTables == null)
                            skippedSSTables = new ArrayList<>();
                        skippedSSTables.add(sstable);
                    }
                    continue;
                }

                sstable.incrementReadCount();
                OnDiskAtomIterator iter = filter.getSSTableColumnIterator(sstable);
                iterators.add(iter);
                if (iter.getColumnFamily() != null)
                {
                    ColumnFamily cf = iter.getColumnFamily();
                    if (cf.isMarkedForDelete())
                        mostRecentRowTombstone = cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt;

                    returnCF.delete(cf);
                    sstablesIterated++;
                }
            }

            int includedDueToTombstones = 0;
            // Check for row tombstone in the skipped sstables
            if (skippedSSTables != null)
            {
                for (SSTableReader sstable : skippedSSTables)
                {
                    if (sstable.getMaxTimestamp() <= minTimestamp)
                        continue;

                    sstable.incrementReadCount();
                    OnDiskAtomIterator iter = filter.getSSTableColumnIterator(sstable);
                    ColumnFamily cf = iter.getColumnFamily();
                    // we are only interested in row-level tombstones here, and only if markedForDeleteAt is larger than minTimestamp
                    if (cf != null && cf.deletionInfo().getTopLevelDeletion().markedForDeleteAt > minTimestamp)
                    {
                        includedDueToTombstones++;
                        iterators.add(iter);
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Examples of org.apache.cassandra.db.columniterator.OnDiskAtomIterator

            if (optimizedFilter == null)
                return data;

            ColumnFamily pruned = data.cloneMeShallow();
            IDiskAtomFilter filter = dataRange.columnFilter(rowKey.key);
            OnDiskAtomIterator iter = filter.getColumnFamilyIterator(rowKey, data);
            filter.collectReducedColumns(pruned, QueryFilter.gatherTombstones(pruned, iter), cfs.gcBefore(timestamp), timestamp);
            return pruned;
        }
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