Examples of ObservationInteger

be.ac.ulg.montefiore.run.jahmm.ObservationInteger
This class holds an integer observation.

Examples of be.ac.ulg.montefiore.run.jahmm.ObservationInteger

   *         ObservationInteger} read.
   */
  public ObservationInteger read(StreamTokenizer st) 
  throws IOException, FileFormatException
  {  
    ObservationInteger oi;
    
    st.ordinaryChar((int)'.');
    
    if (st.nextToken() == StreamTokenizer.TT_NUMBER) {
      if (st.nval > nbElements)
        throw new FileFormatException(st.lineno(),
            "Integer higher than maximum value " + (nbElements-1));
      oi = new ObservationInteger((int) st.nval);
    } else
      throw new FileFormatException(st.lineno(), "Integer expected");
    
    if (st.nextToken() != (int) ';')
      throw new FileFormatException(st.lineno(), "';' expected");

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Examples of be.ac.ulg.montefiore.run.jahmm.ObservationInteger

  throws IOException
  {
    String s = "IntegerOPDF [";
    
    for (int i = 0; i < opdf.nbEntries(); i++)
      s += opdf.probability(new ObservationInteger(i)) + " ";
      
    writer.write(s + "]\n");
  }

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Examples of be.ac.ulg.montefiore.run.jahmm.ObservationInteger

      throw new IllegalArgumentException("Sequence can not finish in the terminal symbol, will add it inside the function");
    }


    // Convert
    ArrayList<ObservationInteger> oSeq = new ArrayList<ObservationInteger>(seq.size()+2);
    oSeq.add(new ObservationInteger(taxo.getStartingSymbolNumber()));
    for (String element : seq) {
      oSeq.add(new ObservationInteger(taxo.getSymbolNumber(element)));
    }
    oSeq.add(new ObservationInteger(taxo.getTerminalSymbolNumber()));


    return oSeq;
  }

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Examples of be.ac.ulg.montefiore.run.jahmm.ObservationInteger

   * @param symbol The symbol
   * @return The emission probability
   */
  public double getEmissionProbability(int state, int symbol) {
    Opdf<ObservationInteger> oPdf = getOpdf(state);
    return oPdf.probability(new ObservationInteger(symbol));
  }

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Examples of be.ac.ulg.montefiore.run.jahmm.ObservationInteger


    sb.append("# Emission probabilities\n");
    for (int state = 0; state < nSt; state++) {
      Opdf<ObservationInteger> oPdf = getOpdf(state);
      for (int symbolNum = 0; symbolNum < nOb; symbolNum++) {
        double p = oPdf.probability(new ObservationInteger(symbolNum));
        if (p > minProb) {
          sb.append("o " + taxo.getState(state).name() + " " + taxo.getSymbol(symbolNum) + " " + p + "\n");
        }
      }
    }

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