Examples of nu.xom.Elements

nu.xom.Elements

A read-only list of elements for traversal purposes. Changes to the document from which this list was generated are not reflected in this list. Changes to the individual Element objects in the list are reflected.
@author Elliotte Rusty Harold @version 1.0

            }
            catch (MalformedURLException ex) {
                // skip this one   
            }
        }
        Elements children = element.getChildElements();
        for (int i = 0; i < children.size(); i++) {
            search(children.get(i), base);
        }
        
    }

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              "Fallback element outside include element", 
              element.getDocument().getBaseURI()
            );
        }
        else {
            Elements children = element.getChildElements();
            for (int i = 0; i < children.size(); i++) {
                resolve(children.get(i), builder, baseURLs);   
            } 
        }
        
    }

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            throw new RuntimeException(
              "XOM BUG: include or fallback element passed to resolveSilently;"
              + " please report with a test case");
        }
        
        Elements children = element.getChildElements();
        for (int i = 0; i < children.size(); i++) {
            resolve(children.get(i), builder, baseURLs, originalDoc);   
        } 
        return new Nodes(element);
        
    }

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    private static void testForForbiddenChildElements(Element element) 
      throws XIncludeException {
        
        int fallbacks = 0;
        Elements children = element.getChildElements();
        int size = children.size();
        for (int i = 0; i < size; i++) {
            Element child = children.get(i);
            if (XINCLUDE_NS.equals(child.getNamespaceURI())) {
                if ("fallback".equals(child.getLocalName())) {
                    fallbacks++;
                    if (fallbacks > 1) {
                        throw new XIncludeException("Multiple fallback elements",

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    }
    
    
    public void testGetChildElementsNull() {
        
        Elements elements = element.getChildElements(
          "", "http://www.example.com");
        assertEquals(2, elements.size());
        elements = element.getChildElements("", "");
        assertEquals(1, elements.size());
        elements = element.getChildElements(null, 
          "http://www.example.com");
        assertEquals(2, elements.size());
        elements = element.getChildElements("", null);
        assertEquals(1, elements.size());  
        
    }

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    }
    
    
    public void testGetChildElements() {
        
        Elements children = element.getChildElements();
        assertEquals(3, children.size());
        assertEquals(child1, children.get(0));
        assertEquals(child4, children.get(1));
        assertEquals(child5, children.get(2));
        
        children = element.getChildElements("nonesuch");
        assertEquals(0, children.size());
        
        children = element.getChildElements("test");
        assertEquals(1, children.size());
        assertEquals(child1, children.get(0));


        children = element.getChildElements(
          "test", "http://www.example.com");
        assertEquals(2, children.size());
        assertEquals(child4, children.get(0));
        assertEquals(child5, children.get(1));
        
    }

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    public void testUnicodeNFCTestSuite() 
      throws ParsingException, IOException {
        
        Builder builder = new Builder();
        Document doc = builder.build("data/nfctests.xml");
        Elements tests = doc.getRootElement().getChildElements("test");
        int size = tests.size();
        for (int i = 0; i < size; i++) {
            // System.out.println(i);
            Element test = tests.get(i);
            test.detach();
            Document testdoc = new Document(test);
            ByteArrayOutputStream out = new ByteArrayOutputStream();
            Serializer serializer = new Serializer(out);
            serializer.setUnicodeNormalizationFormC(true);

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      Element cnde = doc.getRootElement();
      currentChemID = Integer.parseInt(cnde.getAttributeValue("currentChemID"));
      currentNameID = Integer.parseInt(cnde.getAttributeValue("currentNameID"));
      
      Element names = cnde.getFirstChildElement("names");
      Elements nameElems = names.getChildElements();
      for(int i=0;i<nameElems.size();i++) {
        Element nameElem = nameElems.get(i);
        String name = nameElem.getChild(0).getValue();
        int id = Integer.parseInt(nameElem.getAttributeValue("id"));
        nameToNameID.put(name, id);
        nameIDToName.put(id, name);
      }
      
      Element inchis = cnde.getFirstChildElement("inchis");
      Elements inchiElems = inchis.getChildElements();
      for(int i=0;i<inchiElems.size();i++) {
        Element inchiElem = inchiElems.get(i);
        String inchi = inchiElem.getChild(0).getValue();
        int id = Integer.parseInt(inchiElem.getAttributeValue("id"));
        inchiToChemID.put(inchi, id);
        chemIDToInchi.put(id, inchi);
      }
      
      Element smiles = cnde.getFirstChildElement("smiles");
      Elements smileElems = smiles.getChildElements();
      for(int i=0;i<smileElems.size();i++) {
        Element smileElem = smileElems.get(i);
        String smile = smileElem.getChild(0).getValue();
        int id = Integer.parseInt(smileElem.getAttributeValue("id"));
        chemIDToSmiles.put(id, smile);
      }
      
      Element mappings = cnde.getFirstChildElement("mappings");
      Elements mappingElems = mappings.getChildElements();
      for(int i=0;i<mappingElems.size();i++) {
        Element mapping = mappingElems.get(i);
        int chemID = Integer.parseInt(mapping.getAttributeValue("chemID"));
        int nameID = Integer.parseInt(mapping.getAttributeValue("nameID"));
        IDMapping idm = new IDMapping(nameID, chemID);
        idMap.add(idm);
      }
      
      Element stops = cnde.getFirstChildElement("stops");
      if(stops != null) {
        Elements stopElems = stops.getChildElements();
        for(int i=0;i<stopElems.size();i++) {
          Element stop = stopElems.get(i);
          stopWords.add(stop.getValue());
        }
      }  
      
      Element tpc = cnde.getFirstChildElement("triedPubChem");
      if(tpc != null) {
        Elements tpcElems = tpc.getChildElements();
        for(int i=0;i<tpcElems.size();i++) {
          Element tpce = tpcElems.get(i);
          triedPubChem.add(tpce.getValue());
        }
      }  
      
      Element ont = cnde.getFirstChildElement("ontology");
      if(ont != null) {
        Elements ontElems = ont.getChildElements();
        for(int i=0;i<ontElems.size();i++) {
          Element onte = ontElems.get(i);
          ontMap.add(new OntologyMapping(Integer.parseInt(onte.getAttributeValue("chemID")), onte.getValue()));
        }
      }  
    } finally {
      rwLock.writeLock().unlock();

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  }
  
  private ChemRecord xmlToRecord(Element elem) throws Exception {
    if(!elem.getLocalName().equals("record")) throw new Exception();
    ChemRecord record = new ChemRecord();
    Elements inchis = elem.getChildElements("InChI");
    if(inchis.size() != 1) throw new Exception();
    record.inchi = inchis.get(0).getValue();
    Elements smiless = elem.getChildElements("SMILES");
    if(smiless.size() > 1) {
      throw new Exception();
    } else if(smiless.size() == 1) {
      record.smiles = smiless.get(0).getValue();
    }
    Elements names = elem.getChildElements("name");
    for(int i=0;i<names.size();i++) {
      record.names.add(names.get(i).getValue());
    }
    Elements ontIDs = elem.getChildElements("ontID");
    for(int i=0;i<ontIDs.size();i++) {
      record.ontIDs.add(ontIDs.get(i).getValue());
    }    
    return record;
  }

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  private List<Element> annots;
  
  public SAFTester(Document safDoc) {
    this.safDoc = safDoc;
    annots = new ArrayList<Element>();
    Elements annotElems = safDoc.getRootElement().getChildElements("annot");
    for(int i=0;i<annotElems.size();i++) {
      annots.add(annotElems.get(i));
    }
  }

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