Package no.uib.jsparklines.renderers

Examples of no.uib.jsparklines.renderers.JSparklinesArrayListBarChartTableCellRenderer

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        ArrayList<Color> sparklineColors = new ArrayList<Color>();
        sparklineColors.add(peptideShakerGUI.getSparklineColor());
        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorDoubtful());
        sparklineColors.add(nonValidatedColor);

        proteinTable.getColumn("#Peptides").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Spectra").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());

        try {
            proteinTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        } catch (IllegalArgumentException e) {
            proteinTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
            ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                    true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        }

        proteinTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

        sparklineColors = new ArrayList<Color>();
        sparklineColors.add(peptideShakerGUI.getSparklineColor());
        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorDoubtful());
        sparklineColors.add(nonValidatedColor);
        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorNotFound());

        JSparklinesArrayListBarChartTableCellRenderer coverageCellRendered = new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumExceptLastNumber);
        coverageCellRendered.showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0.00"));
        proteinTable.getColumn("Coverage").setCellRenderer(coverageCellRendered);

        // make sure that the user is made aware that the tool is doing something during sorting of the protein table
        proteinTable.getRowSorter().addRowSorterListener(new RowSorterListener() {
            @Override
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        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorDoubtful());
        sparklineColors.add(nonValidatedColor);

        proteinTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        proteinTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), proteinInferenceColorMap, proteinInferenceTooltipMap));
        proteinTable.getColumn("#Peptides").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Spectra").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MW").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MW").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
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        sparklineColors.add(sparklineColor);
        sparklineColors.add(sparklineColorDoubtful);
        sparklineColors.add(nonValidatedColor);
        sparklineColors.add(sparklineColorNotFound);

        JSparklinesArrayListBarChartTableCellRenderer coverageCellRendered = new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumExceptLastNumber);
        coverageCellRendered.showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0.00"));
        proteinTable.getColumn("Coverage").setCellRenderer(coverageCellRendered);

        JSparklinesArrayListBarChartTableCellRenderer peptidesCellRenderer = new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
        peptidesCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Peptides").setCellRenderer(peptidesCellRenderer);

        JSparklinesArrayListBarChartTableCellRenderer spectraCellRenderer = new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
        spectraCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        proteinTable.getColumn("#Spectra").setCellRenderer(spectraCellRenderer);

        JSparklinesBarChartTableCellRenderer spectrumCountingCellRenderer = new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, sparklineColor);
        spectrumCountingCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth());
        proteinTable.getColumn("MS2 Quant.").setCellRenderer(spectrumCountingCellRenderer);
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Related Classes of no.uib.jsparklines.renderers.JSparklinesArrayListBarChartTableCellRenderer

  • eu.isas.peptideshaker.gui.tablemodels.ProteinTableModel
  • eu.isas.peptideshaker.gui.tabpanels.GOEAPanel
  • eu.isas.peptideshaker.gui.tabpanels.ProteinFractionsPanel
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