Package no.uib.jsparklines.data

Examples of no.uib.jsparklines.data.ArrrayListDataPoints

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                    ArrayList<Double> doubleValues = new ArrayList<Double>();
                    doubleValues.add(nConfidentSpectra);
                    doubleValues.add(nDoubtfulSpectra);
                    doubleValues.add(nSpectra - nConfidentSpectra - nDoubtfulSpectra);
                    ArrrayListDataPoints arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
                    return arrrayListDataPoints;
                case 6:
                    psParameter = (PSParameter) identification.getPeptideMatchParameter(peptideKey, new PSParameter(), useDB && !isScrolling);
                    if (psParameter == null) {
                        if (isScrolling) {
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                        ArrayList<Double> doubleValues = new ArrayList<Double>();
                        doubleValues.add(sequenceCoverageConfident);
                        doubleValues.add(sequenceCoverageDoubtful);
                        doubleValues.add(sequenceCoverageNotValidated);
                        doubleValues.add(possibleCoverage - sequenceCoverageConfident - sequenceCoverageDoubtful - sequenceCoverageNotValidated);
                        ArrrayListDataPoints arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumExceptLastNumber);
                        return arrrayListDataPoints;
                    case 7:
                        if (isScrolling) {
                            return null;
                        }
                        proteinMatch = identification.getProteinMatch(proteinKey, useDB);
                        if (!useDB && (proteinMatch == null
                                || !identificationFeaturesGenerator.nValidatedPeptidesInCache(proteinKey)
                                && !identification.proteinDetailsInCache(proteinKey))) {
                            dataMissingAtRow(row);
                            return DisplayPreferences.LOADING_MESSAGE;
                        }
                        double nConfidentPeptides = identificationFeaturesGenerator.getNConfidentPeptides(proteinKey);
                        double nDoubtfulPeptides = identificationFeaturesGenerator.getNValidatedPeptides(proteinKey) - nConfidentPeptides;

                        doubleValues = new ArrayList<Double>();
                        doubleValues.add(nConfidentPeptides);
                        doubleValues.add(nDoubtfulPeptides);
                        doubleValues.add(proteinMatch.getPeptideCount() - nConfidentPeptides - nDoubtfulPeptides);
                        arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
                        return arrrayListDataPoints;
                    case 8:
                        if (isScrolling) {
                            return null;
                        }
                        proteinMatch = identification.getProteinMatch(proteinKey, useDB);
                        if (!useDB
                                && (!identificationFeaturesGenerator.nValidatedSpectraInCache(proteinKey)
                                || !identificationFeaturesGenerator.nSpectraInCache(proteinKey))
                                && (proteinMatch == null || !identification.proteinDetailsInCache(proteinKey))) {
                            dataMissingAtRow(row);
                            return DisplayPreferences.LOADING_MESSAGE;
                        }
                        double nConfidentSpectra = identificationFeaturesGenerator.getNConfidentSpectra(proteinKey);
                        double nDoubtfulSpectra = identificationFeaturesGenerator.getNValidatedSpectra(proteinKey) - nConfidentSpectra;
                        int nSpectra = identificationFeaturesGenerator.getNSpectra(proteinKey);

                        doubleValues = new ArrayList<Double>();
                        doubleValues.add(nConfidentSpectra);
                        doubleValues.add(nDoubtfulSpectra);
                        doubleValues.add(nSpectra - nConfidentSpectra - nDoubtfulSpectra);
                        arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
                        return arrrayListDataPoints;
                    case 9:
                        if (isScrolling) {
                            return null;
                        }
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                        ArrayList<Double> doubleValues = new ArrayList<Double>();
                        doubleValues.add(sequenceCoverageConfident);
                        doubleValues.add(sequenceCoverageDoubtful);
                        doubleValues.add(sequenceCoverageNotValidated);
                        doubleValues.add(possibleCoverage - sequenceCoverageConfident - sequenceCoverageDoubtful - sequenceCoverageNotValidated);
                        ArrrayListDataPoints arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumExceptLastNumber);
                        return arrrayListDataPoints;
                    case 4:
                        try {
                            proteinMatch = identification.getProteinMatch(proteinKey);
                            double nConfidentPeptides = peptideShakerGUI.getIdentificationFeaturesGenerator().getNConfidentPeptides(proteinKey);
                            double nDoubtfulPeptides = peptideShakerGUI.getIdentificationFeaturesGenerator().getNValidatedPeptides(proteinKey) - nConfidentPeptides;

                            doubleValues = new ArrayList<Double>();
                            doubleValues.add(nConfidentPeptides);
                            doubleValues.add(nDoubtfulPeptides);
                            doubleValues.add(proteinMatch.getPeptideCount() - nConfidentPeptides - nDoubtfulPeptides);
                            arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
                            return arrrayListDataPoints;
                        } catch (Exception e) {
                            peptideShakerGUI.catchException(e);
                            return Double.NaN;
                        }
                    case 5:
                        try {
                            double nConfidentSpectra = peptideShakerGUI.getIdentificationFeaturesGenerator().getNConfidentSpectra(proteinKey);
                            double nDoubtfulSpectra = peptideShakerGUI.getIdentificationFeaturesGenerator().getNValidatedSpectra(proteinKey) - nConfidentSpectra;
                            int nSpectra = peptideShakerGUI.getIdentificationFeaturesGenerator().getNSpectra(proteinKey);

                            doubleValues = new ArrayList<Double>();
                            doubleValues.add(nConfidentSpectra);
                            doubleValues.add(nDoubtfulSpectra);
                            doubleValues.add(nSpectra - nConfidentSpectra - nDoubtfulSpectra);
                            arrrayListDataPoints = new ArrrayListDataPoints(doubleValues, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers);
                            return arrrayListDataPoints;
                        } catch (Exception e) {
                            peptideShakerGUI.catchException(e);
                            return Double.NaN;
                        }
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Related Classes of no.uib.jsparklines.data.ArrrayListDataPoints

  • eu.isas.peptideshaker.gui.tablemodels.PeptideTableModel
  • eu.isas.peptideshaker.gui.tablemodels.ProteinGoTableModel
  • eu.isas.peptideshaker.gui.tablemodels.ProteinTableModel
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