Package net.sourceforge.align.calculator.length.counter

Examples of net.sourceforge.align.calculator.length.counter.Counter

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  private List<Alignment> contentAlign(List<Alignment> alignmentList,
      List<Alignment> bestAlignmentList) {
   
    List<Calculator> calculatorList = new ArrayList<Calculator>();
   
    Counter counter = new SplitCounter();
    calculatorList.add(new PoissonDistributionCalculator(counter, alignmentList));
   
    calculatorList.add(new TranslationCalculator(bestAlignmentList));

    Calculator calculator = new CompositeCalculator(calculatorList);
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  /**
   * Constructs algorithm object. It is similar to Gale and Church algorithm.
   */
  @Before
  public void setUp() {
    Counter counter = new CharCounter();
    Calculator calculator = new NormalDistributionCalculator(counter);
    MatrixFactory matrixFactory = new FullMatrixFactory();
   
    algorithm = new ViterbiAlgorithm(calculator,
        CategoryDefaults.BEST_CATEGORY_MAP, matrixFactory);
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Related Classes of net.sourceforge.align.calculator.length.counter.Counter

  • net.sourceforge.align.filter.aligner.align.hmm.fb.ForwardBackwardAlgorithmTest
  • net.sourceforge.align.filter.aligner.align.hmm.viterbi.ViterbiAlgorithmTest
  • net.sourceforge.align.filter.macro.GaleAndChurchMacro
  • net.sourceforge.align.filter.macro.MooreMacro
  • net.sourceforge.align.filter.macro.PoissonMacro
  • net.sourceforge.align.filter.macro.PoissonTranslationMacro
  • net.sourceforge.align.filter.macro.TranslationMacro
  • net.sourceforge.align.ui.console.command.AlignCommand
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