Package net.sf.samtools.SAMFileReader

Examples of net.sf.samtools.SAMFileReader.ValidationStringency

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  private boolean validateCigar(final SAMRecord record,
      final long recordNumber) {
    if (record.getReadUnmappedFlag()) {
      return true;
    }
    final ValidationStringency savedStringency = record
        .getValidationStringency();
    record.setValidationStringency(ValidationStringency.LENIENT);
    final List<SAMValidationError> errors = record
        .validateCigar(recordNumber);
    record.setValidationStringency(savedStringency);
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Related Classes of net.sf.samtools.SAMFileReader.ValidationStringency

  • net.sf.picard.sam.SamFileValidator
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