Package net.sf.picard

Examples of net.sf.picard.PicardException

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    }

    private void assertPairedMates(final SAMRecord record1, final SAMRecord record2) {
        if (! (record1.getFirstOfPairFlag() && record2.getSecondOfPairFlag() ||
               record2.getFirstOfPairFlag() && record1.getSecondOfPairFlag() ) ) {
            throw new PicardException("Illegal mate state: " + record1.getReadName());
        }
    }
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Related Classes of net.sf.picard.PicardException

  • edu.wustl.genome.samtools.GCSamToFastq
  • net.sf.picard.sam.SamFileValidator
  • net.sf.picard.sam.SamFileValidator$CoordinateSortedPairEndInfoMap$Codec
  • org.tgen.sol.SNP.SolSNP
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