Package net.sf.mzmine.data.impl

Examples of net.sf.mzmine.data.impl.SimplePeakListAppliedMethod

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      extendedPeakList.addDescriptionOfAppliedTask(proc);
    }

    // Add task description to peakList
    extendedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Peak extender", parameters));

    // Remove the original peakList if requested
    if (removeOriginal)
      currentProject.removePeakList(peakList);
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        normalizedPeakLists[i].addDescriptionOfAppliedTask(proc);
      }

      // Add task description to peakList
      normalizedPeakLists[i]
          .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
              "Retention time normalization", parameters));

      // Remove the original peaklists if requested
      if (removeOriginal)
        currentProject.removePeakList(originalPeakLists[i]);
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      normalizedPeakList.addDescriptionOfAppliedTask(proc);
    }

    // Add task description to peakList
    normalizedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Linear normalization of by " + normalizationType,
            parameters));

    // Remove the original peaklist if requested
    if (removeOriginal)
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    MZmineProject currentProject = MZmineCore.getCurrentProject();
    currentProject.addPeakList(alignedPeakList);

    // Add task description to peakList
    alignedPeakList
        .addDescriptionOfAppliedTask(new SimplePeakListAppliedMethod(
            "Join aligner", parameters));

    logger.info("Finished join aligner");
    setStatus(TaskStatus.FINISHED);
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Related Classes of net.sf.mzmine.data.impl.SimplePeakListAppliedMethod

  • net.sf.mzmine.modules.peaklistmethods.alignment.join.JoinAlignerTask
  • net.sf.mzmine.modules.peaklistmethods.alignment.path.PathAlignerTask
  • net.sf.mzmine.modules.peaklistmethods.alignment.ransac.RansacAlignerTask
  • net.sf.mzmine.modules.peaklistmethods.filtering.duplicatefilter.DuplicateFilterTask
  • net.sf.mzmine.modules.peaklistmethods.filtering.rowsfilter.RowsFilterTask
  • net.sf.mzmine.modules.peaklistmethods.gapfilling.peakfinder.PeakFinderTask
  • net.sf.mzmine.modules.peaklistmethods.gapfilling.samerange.SameRangeTask
  • net.sf.mzmine.modules.peaklistmethods.identification.adductsearch.AdductSearchTask
  • net.sf.mzmine.modules.peaklistmethods.identification.complexsearch.ComplexSearchTask
  • net.sf.mzmine.modules.peaklistmethods.identification.custom.CustomDBSearchTask
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