Package net.sf.cram.encoding.read_features

Examples of net.sf.cram.encoding.read_features.ReadBaseCodec


  public BitCodec<ReadBase> buildCodec(CramHeader header,
      CompressionHeader compression,
      SequenceBaseProvider referenceBaseProvider,
      DefaultMutableTreeNode parent) throws CramCompressionException {

    ReadBaseCodec codec = new ReadBaseCodec();
    DefaultMutableTreeNode node = buildNode(codec, "Read base codec");
    parent.add(node);

    BitCodec<Byte> baseCodec = bitCodecFactory.buildByteCodec(compression
        .eMap.get(EncodingKey.BA_Base));
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Related Classes of net.sf.cram.encoding.read_features.ReadBaseCodec

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