Package net.sf.cram.encoding.factory

Examples of net.sf.cram.encoding.factory.RecordCodecFactory

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  }

  public static CramRecordCodec buildCodec(CramHeader cramHeader, CramRecordBlock crBlock,
      SequenceBaseProvider provider) throws CramCompressionException {
    RecordCodecFactory rcf = new RecordCodecFactory();
    DefaultMutableTreeNode rootNode = rcf.buildCodecTree(cramHeader, crBlock, provider);
    uk.ac.ebi.ena.sra.cram.encoding.MeasuringCodec mCodec = (MeasuringCodec) rootNode.getUserObject();
    uk.ac.ebi.ena.sra.cram.encoding.CramRecordCodec crCodec = (uk.ac.ebi.ena.sra.cram.encoding.CramRecordCodec) mCodec
        .getDelegate();
    CramRecordCodec codec = new CramRecordCodec();
    codec.baseCodec = crCodec.baseCodec;
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Related Classes of net.sf.cram.encoding.factory.RecordCodecFactory

  • net.sf.cram.Coder
  • net.sf.cram.CramRecordCodec
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