Examples of NetworkLayout

cysbml.layout.NetworkLayout

Gets the information for the Layout positions and boundary boxes. - Compartment information is ignored. - Only the first layout is used, additional layouts are not taken into account Special care has to be taken about the differences between the layout and the underlying graph. In the Layout one species can have multiple layouts information or no layout information attached. Only layout information which is a one-to-one mapping to species and reactions is used. - no layout information : generic layout information is generated - multiple layout information : last layout information is used. @author Matthias Koenig

  }
  
  
  /** Use the layout extension to make the Layout */
  public void applyLayout(CyNetwork network, Layout layout){
    NetworkLayout networkLayout = new NetworkLayout(document, layout);
    networkLayout.setNetworkAttributesFromBoundingBoxes(network);
    networkLayout.applyLayoutPositionsToLayoutNetwork(network);
  }

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Examples of NetworkLayout

Examples of cysbml.layout.NetworkLayout