Examples of Module


Examples of LONI.tree.GraphObject.Module

     */
    /*
     * Create the setupModule.
     *
     */
    setupModule = new Module();
    setupContext = new LoniContext();
    setupModule.setId("Setup");
    setupModule.setRotation(4);
    setupModule.setName("Setup");
    setupModule.setLocation(ConverterConstants.LOCALHOST_PATH + ConverterConfig.PYTHON_BIN);
   
    //create the String parameter containing the script name for the
    //setup module.
    LONI.tree.module.Parameter setupScript = new LONI.tree.module.Parameter();
    setupScript.setEnabled(true);
    setupScript.setFileFormat(new Format());
    setupScript.getFileFormat().setCardinality(1);
    setupScript.getFileFormat().setType("String");
    setupScript.setOrder(0);
    setupScript.setName("setupScript");
    Value scriptValue = new Value();
    scriptValue.setValue("{"+SCRIPT_DIR+"}setup_workflow.py");
    setupScript.getValues().addValue(scriptValue);
    setupModule.getInputs().add(setupScript);
   
    //Create the String Parameter that contains the Galaxy API Key
    //for the setupScript Module.
    LONI.tree.module.Parameter setupAPI = new LONI.tree.module.Parameter();
    setupAPI.setEnabled(true);
    setupAPI.setFileFormat(new Format());
    setupAPI.getFileFormat().setCardinality(1);
    setupAPI.getFileFormat().setType("String");
    setupAPI.setOrder(1);
    setupAPI.setName("Galaxy API Key");
    setupAPI.setPrefix("-api-key");
    setupAPI.setPrefixSpaced(true);
    Value apiValue = new Value();
    apiValue.setValue("{"+API_KEY+"}");
    setupAPI.getValues().addValue(apiValue);
    setupModule.getInputs().add(setupAPI);
   
    /*
     * Initialize and add the String parameter that contains the Galaxy Root Directory
     * to the setup Module. This directory is used to call python scripts inside Galaxy.
     */
    LONI.tree.module.Parameter setupGalRootDir = new LONI.tree.module.Parameter();
    setupGalRootDir.setEnabled(true);
    setupGalRootDir.setFileFormat(new Format());
    setupGalRootDir.getFileFormat().setCardinality(1);
    setupGalRootDir.getFileFormat().setType("String");
    setupGalRootDir.setOrder(1);
    setupGalRootDir.setName("Galaxy Root Dir");
    setupGalRootDir.setPrefix("-galaxy-root-dir");
    setupGalRootDir.setPrefixSpaced(true);
    Value setupGalRootDirValue = new Value();
    setupGalRootDirValue.setValue("{"+GALAXY_DIR+"}");
    setupGalRootDir.getValues().addValue(setupGalRootDirValue);
    setupModule.getInputs().add(setupGalRootDir);
   
    /*
     * Initialize and add String parameter containing Galaxy server url to setup module.
     */
    LONI.tree.module.Parameter setupGalURLDir = new LONI.tree.module.Parameter();
    setupGalURLDir.setEnabled(true);
    setupGalURLDir.setFileFormat(new Format());
    setupGalURLDir.getFileFormat().setCardinality(1);
    setupGalURLDir.getFileFormat().setType("String");
    setupGalURLDir.setOrder(2);
    setupGalURLDir.setPrefixSpaced(true);
    setupGalURLDir.setName("Galaxy URL");
    setupGalURLDir.setPrefix("-galaxy-url");
    Value setupGalaxyURLValue = new Value();
    setupGalaxyURLValue.setValue("{"+GALAXY_URL+"}");
    setupGalURLDir.getValues().addValue(setupGalaxyURLValue);
    setupModule.getInputs().add(setupGalURLDir);
   
    /*
     * Initialize and add String cookie parameter containing cookie for website
     * to setup module.
     */
    LONI.tree.module.Parameter setupCookie = new LONI.tree.module.Parameter();
    setupCookie.setEnabled(true);
    setupCookie.setFileFormat(new Format());
    setupCookie.getFileFormat().setCardinality(1);
    setupCookie.getFileFormat().setType("String");
    setupCookie.setOrder(2);
    setupCookie.setName("Cookie for galaxy site");
    setupCookie.setPrefix("-cookie");
    setupCookie.setPrefixSpaced(true);
    Value setupCookieValue = new Value();
    setupCookieValue.setValue("{"+COOKIE+"}");
    setupCookie.getValues().addValue(setupCookieValue);
    setupModule.getInputs().add(setupCookie);
   
    /*
     * Initialize and fill in the run module.
     *
     */
    runModule = new Module();
    runModule.setRotation(4);
    runContext = new LoniContext();
    runModule.setId("Run");
    runModule.setLocation(ConverterConstants.LOCALHOST_PATH + ConverterConfig.PYTHON_BIN);
   
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Examples of anvil.script.Module

  public Product resolveProduct(String filename) throws Throwable
  {
    Zone zone = resolveZone(filename);
    Address address = zone.resolve(filename);
    Module script = getCache().load(address).getModule();
    return new Product(address, System.out, script);
 
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Examples of apigen.adt.api.types.Module

  private static void generateSignature(ADT adt,
      JavaTomGenerationParameters params) {
    Iterator<Module> it = adt.moduleIterator();
    while (it.hasNext()) {
      Module module = it.next();
      JavaTomSignatureImplementation signature = new JavaTomSignatureImplementation(
          params, module);
      new JavaTomSignatureGenerator(adt, signature, params, module).run();
    }
  }
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Examples of ast.Module

  private void runtest(String[] modules_src, String main_module, String main_function, Class<?>[] parm_types, Object[] args, Object expected) {
    try {
      List<Module> modules = new List<Module>();
      for(String module_src : modules_src) {
        Parser parser = new Parser();
        Module module = (Module)parser.parse(new Lexer(new StringReader(module_src)));
        modules.add(module);
      }
      Program prog = new Program(modules);
     
      prog.namecheck();
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Examples of avrora.syntax.Module

            Avrora.userError("no input files");
        if (args.length != 1)
            Avrora.userError("input type \"atmel\" accepts only one file at a time.");

        File f = new File(args[0]);
        Module module = new Module(false, false);
        FileInputStream fis = new FileInputStream(f);
        //Status.begin("Parsing");
        AtmelParser parser = new AtmelParser(fis, module, f.getName());
        parser.Module();
        //Status.success();
        //Status.begin("Building");
        Program p = module.build();
        //Status.success();
        addIndirectEdges(p);
        return p;
    }
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Examples of ca.grimoire.jnoise.modules.Module

   *           source builder fails to build a module.
   */
  public Displace createModule () throws BuilderException {
    List<ModuleBuilder> builders = checkSources ();

    Module source = builders.get (SOURCE_CHILD).createModule ();
    Module x = builders.get (X_CHILD).createModule ();
    Module y = builders.get (Y_CHILD).createModule ();
    Module z = builders.get (Z_CHILD).createModule ();

    return new Displace (source, x, y, z);
  }
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Examples of ceylon.language.meta.declaration.Module

    private Declaration module(String version) {
        String moduleName = moduleName();
        if (moduleName == null || moduleName.isEmpty()) {
            throw parseError("Missing module name");
        }
        Module module = makeModule(moduleName, version);
        if (atEnd()) {
            return module;
        }
        return package_(module);
       
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Examples of ch.bfh.swos.gandalf.model.Module

    qg.setName("A");
    qg.setMin_ects(8);
    qg.setMax_ects(15);

    List<Module> listMod = new ArrayList<Module>();
    listMod.add(new Module());
    listMod.add(new Module());
    qg.setModules(listMod);

    Assert.assertTrue(qg.getName().equals("A"));
    Assert.assertTrue(qg.getMin_ects() == 8);
    Assert.assertTrue(qg.getMax_ects() == 15);
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Examples of ch.entwine.weblounge.common.site.Module

    this.composerId = composer;
    this.pageletIndex = pageletIndex;
    this.environment = environment;

    Site site = uri.getSite();
    Module module = site.getModule(pagelet.getModule());
    if (module != null) {
      renderer = module.getRenderer(pagelet.getIdentifier());
      renderer.setEnvironment(environment);
    }
  }
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Examples of ch.tatool.data.Module

      }
    }

  /** Initializes this aspect. */
  private void initialize(ExecutionContext event) {
    Module module = event.getExecutionData().getModule();
    // read the last timeout data from the module aspect properties, use
    // default value if not provided
    long timeoutDuration = getDefaultTimerDuration();
    timeoutDuration = durationProperty.getValue(module, this, timeoutDuration);
    setDefaultTimerDuration(timeoutDuration);
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