Examples of KamProtoNode

Examples of org.openbel.framework.api.internal.KAMStoreDaoImpl.KamProtoNode

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                    dao, SELECT_PROTO_EDGES_SQL);
            rset = ps.executeQuery();

            while (rset.next()) {
                Integer kamEdgeId = rset.getInt(1);
                KamProtoNode sourceKamProtoNode = kamProtoNodeMap.get(rset.getInt(2));
                Integer relationshipTypeId = rset.getInt(3);
                KamProtoNode targetKamProtoNode = kamProtoNodeMap.get(rset.getInt(4));

                // Sanity checks
                if (null == sourceKamProtoNode) {
                    throw new SQLException(String.format("Source node for edge %d is missing.", kamEdgeId));
                }
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Examples of org.openbel.framework.api.internal.KAMStoreDaoImpl.KamProtoNode

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                    + SELECT_KAM_NODE_PARAMETERS_ORDER_SQL,
                    TYPE_SCROLL_INSENSITIVE, CONCUR_READ_ONLY);
            paramsRs = pps.executeQuery();

            while (nodesRs.next()) {
                KamProtoNode kamProtoNode = (KamProtoNode) getKamProtoNode.invoke(
                        dao, nodesRs, paramsRs);
                map.put(kamProtoNode.getId(), kamProtoNode);
            }
        } finally {
            close.invoke(dao, nodesRs);
            close.invoke(dao, paramsRs);
        }
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