}
jobExecutionContext.addSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT,context);
}
public static JobDescriptor createJobDescriptor(JobExecutionContext jobExecutionContext,
ApplicationDeploymentDescriptionType app, Cluster cluster) {
JobDescriptor jobDescriptor = new JobDescriptor();
// this is common for any application descriptor
jobDescriptor.setInputDirectory(app.getInputDataDirectory());
jobDescriptor.setOutputDirectory(app.getOutputDataDirectory());
jobDescriptor.setExecutablePath(app.getExecutableLocation());
jobDescriptor.setStandardOutFile(app.getStandardOutput());
jobDescriptor.setStandardErrorFile(app.getStandardError());
Random random = new Random();
int i = random.nextInt();
jobDescriptor.setJobName(app.getApplicationName().getStringValue() + String.valueOf(i));
jobDescriptor.setWorkingDirectory(app.getStaticWorkingDirectory());
List<String> inputValues = new ArrayList<String>();
MessageContext input = jobExecutionContext.getInMessageContext();
Map<String, Object> inputs = input.getParameters();
Set<String> keys = inputs.keySet();
for (String paramName : keys) {
ActualParameter actualParameter = (ActualParameter) inputs.get(paramName);
if ("URIArray".equals(actualParameter.getType().getType().toString()) || "StringArray".equals(actualParameter.getType().getType().toString())
|| "FileArray".equals(actualParameter.getType().getType().toString())) {
String[] values = null;
if (actualParameter.getType() instanceof URIArrayType) {
values = ((URIArrayType) actualParameter.getType()).getValueArray();
} else if (actualParameter.getType() instanceof StringArrayType) {
values = ((StringArrayType) actualParameter.getType()).getValueArray();
} else if (actualParameter.getType() instanceof FileArrayType) {
values = ((FileArrayType) actualParameter.getType()).getValueArray();
}
String value = StringUtil.createDelimiteredString(values, " ");
inputValues.add(value);
} else {
String paramValue = MappingFactory.toString(actualParameter);
inputValues.add(paramValue);
}
}
jobDescriptor.setInputValues(inputValues);
// this part will fill out the hpcApplicationDescriptor
if (app instanceof HpcApplicationDeploymentType) {
HpcApplicationDeploymentType applicationDeploymentType
= (HpcApplicationDeploymentType) app;
jobDescriptor.setShellName("/bin/bash");
jobDescriptor.setAllEnvExport(true);
jobDescriptor.setMailOptions("n");
jobDescriptor.setNodes(applicationDeploymentType.getNodeCount());
jobDescriptor.setProcessesPerNode(applicationDeploymentType.getProcessorsPerNode());
jobDescriptor.setMaxWallTime(String.valueOf(applicationDeploymentType.getMaxWallTime()));
jobDescriptor.setJobSubmitter(applicationDeploymentType.getJobSubmitterCommand());
if (applicationDeploymentType.getProjectAccount() != null) {
if (applicationDeploymentType.getProjectAccount().getProjectAccountNumber() != null) {
jobDescriptor.setAcountString(applicationDeploymentType.getProjectAccount().getProjectAccountNumber());
}
}
if (applicationDeploymentType.getQueue() != null) {
if (applicationDeploymentType.getQueue().getQueueName() != null) {
jobDescriptor.setQueueName(applicationDeploymentType.getQueue().getQueueName());
}
}
jobDescriptor.setOwner(((PBSCluster) cluster).getServerInfo().getUserName());
TaskDetails taskData = jobExecutionContext.getTaskData();
if (taskData != null && taskData.isSetTaskScheduling()) {
ComputationalResourceScheduling computionnalResource = taskData.getTaskScheduling();
if (computionnalResource.getNodeCount() > 0) {
jobDescriptor.setNodes(computionnalResource.getNodeCount());
}
if (computionnalResource.getComputationalProjectAccount() != null) {
jobDescriptor.setAcountString(computionnalResource.getComputationalProjectAccount());
}
if (computionnalResource.getQueueName() != null) {
jobDescriptor.setQueueName(computionnalResource.getQueueName());
}
if (computionnalResource.getTotalCPUCount() > 0) {
jobDescriptor.setProcessesPerNode(computionnalResource.getTotalCPUCount());
}
if (computionnalResource.getWallTimeLimit() > 0) {
jobDescriptor.setMaxWallTime(String.valueOf(computionnalResource.getWallTimeLimit()));
}
}
}
return jobDescriptor;