*
*/
String dbPath = configMap.get("databaseFilePath");
String outDir = configMap.get("outputDirectoryPath");
Database db = new Database(dbPath);
System.out.println(" Extracting input peptide sequences...");
// instantiate objects
JMotifXAroundSitePeptideObjectsMaker objsMaker = new JMotifXAroundSitePeptideObjectsMaker();