Examples of JenaIOHandler

Examples of org.biopax.paxtools.io.jena.JenaIOHandler

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  public JenaIOHandler getJenaIOHandler()
  {
    if (jenaIOHandler == null)
    {
      this.jenaIOHandler = new JenaIOHandler(null, BioPAXLevel.L2);
      this.jenaIOHandler.setStrict(false);
    }

    return jenaIOHandler;
  }
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Examples of org.biopax.paxtools.io.jena.JenaIOHandler

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  public JenaIOHandler getJenaIOHandler()
  {
    if (jenaIOHandler == null)
    {
      this.jenaIOHandler = new JenaIOHandler(null, BioPAXLevel.L2);
      this.jenaIOHandler.setStrict(false);
    }

    return jenaIOHandler;
  }
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Examples of org.biopax.paxtools.io.jena.JenaIOHandler

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        {
          graph.recordLayout();
        }
      }

      JenaIOHandler jenaIOHandler = main.getJenaIOHandler();

      FileOutputStream stream = new FileOutputStream(filename);
      jenaIOHandler.convertToOWL(main.getOwlModel(), stream);
      stream.close();

      main.setOwlFileName(filename);
      main.markSaved();
      this.saved = true;
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