Package io.lumify.core.security

Examples of io.lumify.core.security.LumifyVisibility

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        this.workQueueRepository = workQueueRepository;
    }

    @Override
    public void handle(HttpServletRequest request, HttpServletResponse response, HandlerChain chain) throws Exception {
        LumifyVisibility lumifyVisibility = new LumifyVisibility();
        final String propertyName = getRequiredParameter(request, "propertyName");
        final String propertyKey = getRequiredParameter(request, "propertyKey");
        final String sourceId = getRequiredParameter(request, "source");
        final String destId = getRequiredParameter(request, "dest");
        final String edgeId = getRequiredParameter(request, "edgeId");

        User user = getUser(request);
        Authorizations authorizations = getAuthorizations(request, user);
        String workspaceId = getActiveWorkspaceId(request);

        OntologyProperty property = ontologyRepository.getPropertyByIRI(propertyName);
        if (property == null) {
            throw new RuntimeException("Could not find property: " + propertyName);
        }

        // TODO remove all properties from all edges? I don't think so
        Edge edge = graph.getEdge(edgeId, authorizations);
        Object oldValue = null;
        Property oldProperty = edge.getProperty(propertyKey, propertyName);
        if (oldProperty != null) {
            oldValue = oldProperty.getValue();
        }
        // TODO: replace "" when we implement commenting on ui
        auditRepository.auditRelationshipProperty(AuditAction.DELETE, sourceId, destId, propertyKey, property.getDisplayName(),
                oldValue, null, edge, "", "", user, lumifyVisibility.getVisibility());
        edge.removeProperty(propertyKey, propertyName, authorizations);
        graph.flush();

        workQueueRepository.pushGraphPropertyQueue(edge, null, propertyName, workspaceId, null);
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        Workspace workspace = workspaceRepository.findById(workspaceId, user);

        Authorizations authorizations = getAuthorizations(request, user);

        VisibilityJson visibilityJson = GraphUtil.updateVisibilitySourceAndAddWorkspaceId(null, visibilitySource, workspaceId);
        LumifyVisibility visibility = this.visibilityTranslator.toVisibility(visibilityJson);
        if (!graph.isVisibilityValid(visibility.getVisibility(), authorizations)) {
            LOGGER.warn("%s is not a valid visibility for %s user", visibilitySource, user.getDisplayName());
            respondWithBadRequest(response, "visibilitySource", getString(request, "visibility.invalid"));
            chain.next(request, response);
            return;
        }

        String id = resolvedVertexId == null ? graph.getIdGenerator().nextId() : resolvedVertexId;

        Concept concept = ontologyRepository.getConceptByIRI(conceptId);

        final Vertex artifactVertex = graph.getVertex(artifactId, authorizations);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);
        Map<String, Object> metadata = new HashMap<String, Object>();
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);
        ElementMutation<Vertex> vertexMutation;
        Vertex vertex;
        if (resolvedVertexId != null) {
            vertex = graph.getVertex(id, authorizations);
            vertexMutation = vertex.prepareMutation();
        } else {
            vertexMutation = graph.prepareVertex(id, lumifyVisibility.getVisibility());
            GraphUtil.addJustificationToMutation(vertexMutation, justificationText, sourceInfo, lumifyVisibility);

            LumifyProperties.CONCEPT_TYPE.setProperty(vertexMutation, conceptId, metadata, lumifyVisibility.getVisibility());
            LumifyProperties.TITLE.addPropertyValue(vertexMutation, MULTI_VALUE_KEY, title, metadata, lumifyVisibility.getVisibility());

            vertex = vertexMutation.save(authorizations);

            auditRepository.auditVertexElementMutation(AuditAction.UPDATE, vertexMutation, vertex, "", user, lumifyVisibility.getVisibility());

            LumifyProperties.VISIBILITY_JSON.setProperty(vertexMutation, visibilityJson, metadata, lumifyVisibility.getVisibility());

            this.graph.flush();

            workspaceRepository.updateEntityOnWorkspace(workspace, vertex.getId(), false, null, user);
        }

        // TODO: a better way to check if the same edge exists instead of looking it up every time?
        Edge edge = graph.addEdge(artifactVertex, vertex, this.artifactHasEntityIri, lumifyVisibility.getVisibility(), authorizations);
        LumifyProperties.VISIBILITY_JSON.setProperty(edge, visibilityJson, metadata, lumifyVisibility.getVisibility(), authorizations);

        auditRepository.auditRelationship(AuditAction.CREATE, artifactVertex, vertex, edge, "", "", user, lumifyVisibility.getVisibility());

        new TermMentionBuilder()
                .sourceVertex(artifactVertex)
                .propertyKey(propertyKey)
                .start(mentionStart)
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            return;
        }
        ElementMutation<Vertex> entityVertexMutation = entityVertex.prepareMutation();

        VisibilityJson visibilityJson = getLumifyVisibility(entityVertex, workspaceId);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        Map<String, Object> metadata = new HashMap<String, Object>();
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);

        String title = String.format("Image of %s", LumifyProperties.TITLE.getPropertyValue(entityVertex));
        ElementBuilder<Vertex> artifactVertexBuilder = convertToArtifact(file, title, visibilityJson, metadata, lumifyVisibility, authorizations);
        Vertex artifactVertex = artifactVertexBuilder.save(authorizations);
        this.graph.flush();

        auditRepository.auditVertexElementMutation(AuditAction.UPDATE, artifactVertexBuilder, artifactVertex, "", user, lumifyVisibility.getVisibility());

        entityVertexMutation.setProperty(LumifyProperties.ENTITY_IMAGE_VERTEX_ID.getPropertyName(), artifactVertex.getId(), metadata, lumifyVisibility.getVisibility());
        auditRepository.auditVertexElementMutation(AuditAction.UPDATE, entityVertexMutation, entityVertex, "", user, lumifyVisibility.getVisibility());
        entityVertex = entityVertexMutation.save(authorizations);
        graph.flush();

        List<Edge> existingEdges = toList(entityVertex.getEdges(artifactVertex, Direction.BOTH, entityHasImageIri, authorizations));
        if (existingEdges.size() == 0) {
            EdgeBuilder edgeBuilder = graph.prepareEdge(entityVertex, artifactVertex, entityHasImageIri, lumifyVisibility.getVisibility());
            LumifyProperties.VISIBILITY_JSON.setProperty(edgeBuilder, visibilityJson, lumifyVisibility.getVisibility());
            Edge edge = edgeBuilder.save(authorizations);
            auditRepository.auditRelationship(AuditAction.CREATE, entityVertex, artifactVertex, edge, "", "", user, lumifyVisibility.getVisibility());
        }

        this.workspaceRepository.updateEntityOnWorkspace(workspace, artifactVertex.getId(), false, null, user);
        this.workspaceRepository.updateEntityOnWorkspace(workspace, entityVertex.getId(), false, null, user);
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        if (!visibilityJson.getWorkspaces().contains(workspaceId)) {
            throw new LumifyException(String.format("vertex with id '%s' is not local to workspace '%s'", vertex.getId(), workspaceId));
        }

        visibilityJson = GraphUtil.updateVisibilityJsonRemoveFromAllWorkspace(visibilityJson);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        ExistingElementMutation<Vertex> vertexElementMutation = vertex.prepareMutation();
        vertexElementMutation.alterElementVisibility(lumifyVisibility.getVisibility());

        for (Property property : vertex.getProperties()) {
            OntologyProperty ontologyProperty = ontologyRepository.getPropertyByIRI(property.getName());
            checkNotNull(ontologyProperty, "Could not find ontology property " + property.getName());
            if (!ontologyProperty.getUserVisible() && !property.getName().equals(LumifyProperties.ENTITY_IMAGE_VERTEX_ID.getPropertyName())) {
                publishProperty(vertexElementMutation, property, workspaceId, user);
            }
        }

        Map<String, Object> metadata = new HashMap<String, Object>();
        // we need to alter the visibility of the json property, otherwise we'll have two json properties, one with the old visibility and one with the new.
        LumifyProperties.VISIBILITY_JSON.alterVisibility(vertexElementMutation, visibilityJsonProperty.getKey(), lumifyVisibility.getVisibility());
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);
        LumifyProperties.VISIBILITY_JSON.addPropertyValue(vertexElementMutation, visibilityJsonProperty.getKey(), visibilityJson, metadata, lumifyVisibility.getVisibility());
        vertexElementMutation.save(authorizations);

        auditRepository.auditVertex(AuditAction.PUBLISH, vertex.getId(), "", "", user, lumifyVisibility.getVisibility());

        ModelUserContext systemModelUser = userRepository.getModelUserContext(authorizations, LumifyVisibility.SUPER_USER_VISIBILITY_STRING);
        for (Audit row : auditRepository.findByRowStartsWith(vertex.getId(), systemModelUser)) {
            auditRepository.updateColumnVisibility(row, originalVertexVisibility, lumifyVisibility.getVisibility().getVisibilityString());
        }

        for (Vertex termMention : termMentionRepository.findBySourceGraphVertex(vertex.getId(), authorizations)) {
            if (count(termMention.getEdgeIds(Direction.OUT, LumifyProperties.TERM_MENTION_LABEL_RESOLVED_TO, authorizations)) > 0) {
                continue; // skip all resolved terms. They will be published by the edge.
            }
            termMentionRepository.updateVisibility(termMention, lumifyVisibility.getVisibility(), authorizations);
        }

        graph.flush();
    }
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            return false;
        }

        LOGGER.debug("publishing property %s:%s(%s)", property.getKey(), property.getName(), property.getVisibility().toString());
        visibilityJson = GraphUtil.updateVisibilityJsonRemoveFromAllWorkspace(visibilityJson);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        elementMutation
                .alterPropertyVisibility(property, lumifyVisibility.getVisibility())
                .alterPropertyMetadata(property, LumifyProperties.VISIBILITY_JSON.getPropertyName(), visibilityJson.toString());

        auditRepository.auditEntityProperty(AuditAction.PUBLISH, elementMutation.getElement().getId(), property.getKey(),
                property.getName(), property.getValue(), property.getValue(), "", "", property.getMetadata(), user, lumifyVisibility.getVisibility());
        return true;
    }
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            publishGlyphIconProperty(edge, workspaceId, user, authorizations);
        }

        edge.removeProperty(LumifyProperties.VISIBILITY_JSON.getPropertyName(), authorizations);
        visibilityJson = GraphUtil.updateVisibilityJsonRemoveFromAllWorkspace(visibilityJson);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);
        ExistingElementMutation<Edge> edgeExistingElementMutation = edge.prepareMutation();
        Visibility originalEdgeVisibility = edge.getVisibility();
        edgeExistingElementMutation.alterElementVisibility(lumifyVisibility.getVisibility());

        for (Property property : edge.getProperties()) {
            publishProperty(edgeExistingElementMutation, property, workspaceId, user);
        }

        auditRepository.auditEdgeElementMutation(AuditAction.PUBLISH, edgeExistingElementMutation, edge, sourceVertex, destVertex, "", user, lumifyVisibility.getVisibility());

        Map<String, Object> metadata = new HashMap<String, Object>();
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);
        LumifyProperties.VISIBILITY_JSON.setProperty(edgeExistingElementMutation, visibilityJson, metadata, lumifyVisibility.getVisibility());
        edge = edgeExistingElementMutation.save(authorizations);

        auditRepository.auditRelationship(AuditAction.PUBLISH, sourceVertex, destVertex, edge, "", "", user, edge.getVisibility());

        ModelUserContext systemUser = userRepository.getModelUserContext(authorizations, LumifyVisibility.SUPER_USER_VISIBILITY_STRING);
        for (Audit row : auditRepository.findByRowStartsWith(edge.getId(), systemUser)) {
            auditRepository.updateColumnVisibility(row, originalEdgeVisibility, lumifyVisibility.getVisibility().getVisibilityString());
        }

        for (Vertex termMention : termMentionRepository.findResolvedTo(destVertex.getId(), authorizations)) {
            termMentionRepository.updateVisibility(termMention, lumifyVisibility.getVisibility(), authorizations);
        }
    }
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        ontologyRepository.init(lumifyConfiguration);

        workspaceRepository = new SecureGraphWorkspaceRepository(ontologyRepository, graph, userRepository, authorizationRepository, workspaceDiff, lockRepository);

        String entity1VertexId = "entity1Id";
        entity1Vertex = graph.addVertex(entity1VertexId, new LumifyVisibility().getVisibility(), new InMemoryAuthorizations());
    }
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        }

        this.workQueueRepository.pushEdgeDeletion(edge);

        // TODO: replace "" when we implement commenting on ui
        auditRepository.auditRelationship(AuditAction.DELETE, sourceVertex, destVertex, edge, "", "", user, new LumifyVisibility().getVisibility());

        graph.flush();
    }
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    private JSONArray undoVertex(Vertex vertex, String workspaceId, Authorizations authorizations, User user) {
        JSONArray unresolved = new JSONArray();
        VisibilityJson visibilityJson = LumifyProperties.VISIBILITY_JSON.getPropertyValue(vertex);
        visibilityJson = GraphUtil.updateVisibilityJsonRemoveFromAllWorkspace(visibilityJson);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        for (Edge edge : vertex.getEdges(Direction.BOTH, entityHasImageIri, authorizations)) {
            if (edge.getVertexId(Direction.IN).equals(vertex.getId())) {
                Vertex outVertex = edge.getVertex(Direction.OUT, authorizations);
                Property entityHasImage = outVertex.getProperty(LumifyProperties.ENTITY_IMAGE_VERTEX_ID.getPropertyName());
                outVertex.removeProperty(entityHasImage.getName(), authorizations);
                this.workQueueRepository.pushElementImageQueue(outVertex, entityHasImage);
            }
        }

        for (Edge edge : vertex.getEdges(Direction.BOTH, artifactContainsImageOfEntityIri, authorizations)) {
            for (Property rowKeyProperty : vertex.getProperties(LumifyProperties.ROW_KEY.getPropertyName())) {
                String multiValueKey = rowKeyProperty.getValue().toString();
                if (edge.getVertexId(Direction.IN).equals(vertex.getId())) {
                    Vertex outVertex = edge.getVertex(Direction.OUT, authorizations);
                    // remove property
                    LumifyProperties.DETECTED_OBJECT.removeProperty(outVertex, multiValueKey, authorizations);
                    graph.removeEdge(edge, authorizations);
                    auditRepository.auditRelationship(AuditAction.DELETE, outVertex, vertex, edge, "", "", user, lumifyVisibility.getVisibility());
                    this.workQueueRepository.pushEdgeDeletion(edge);
                    this.workQueueRepository.pushGraphPropertyQueue(outVertex, multiValueKey,
                            LumifyProperties.DETECTED_OBJECT.getPropertyName(), workspaceId, visibilityJson.getSource());
                }
            }
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            chain.next(request, response);
            return;
        }

        VisibilityJson visibilityJson = GraphUtil.updateVisibilitySourceAndAddWorkspaceId(null, visibilitySource, workspaceId);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        Concept concept = ontologyRepository.getConceptByIRI(conceptId);
        Vertex artifactVertex = graph.getVertex(artifactId, authorizations);
        ElementMutation<Vertex> resolvedVertexMutation;

        Map<String, Object> metadata = new HashMap<String, Object>();
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);

        Vertex resolvedVertex;
        if (graphVertexId == null || graphVertexId.equals("")) {
            resolvedVertexMutation = graph.prepareVertex(lumifyVisibility.getVisibility());

            LumifyProperties.CONCEPT_TYPE.setProperty(resolvedVertexMutation, concept.getTitle(), metadata, lumifyVisibility.getVisibility());
            LumifyProperties.TITLE.setProperty(resolvedVertexMutation, title, metadata, lumifyVisibility.getVisibility());

            resolvedVertex = resolvedVertexMutation.save(authorizations);
            auditRepository.auditVertexElementMutation(AuditAction.UPDATE, resolvedVertexMutation, resolvedVertex, "", user, lumifyVisibility.getVisibility());
            GraphUtil.addJustificationToMutation(resolvedVertexMutation, justificationText, sourceInfo, lumifyVisibility);

            resolvedVertex = resolvedVertexMutation.save(authorizations);

            auditRepository.auditVertexElementMutation(AuditAction.UPDATE, resolvedVertexMutation, resolvedVertex, "", user, lumifyVisibility.getVisibility());
            LumifyProperties.VISIBILITY_JSON.setProperty(resolvedVertexMutation, visibilityJson, metadata, lumifyVisibility.getVisibility());

            graph.flush();

            workspaceRepository.updateEntityOnWorkspace(workspace, resolvedVertex.getId(), false, null, user);
        } else {
            resolvedVertex = graph.getVertex(graphVertexId, authorizations);
            resolvedVertexMutation = resolvedVertex.prepareMutation();
        }

        Edge edge = graph.addEdge(artifactVertex, resolvedVertex, artifactContainsImageOfEntityIri, lumifyVisibility.getVisibility(), authorizations);
        LumifyProperties.VISIBILITY_JSON.setProperty(edge, visibilityJson, metadata, lumifyVisibility.getVisibility(), authorizations);
        auditRepository.auditRelationship(AuditAction.CREATE, artifactVertex, resolvedVertex, edge, "", "", user, lumifyVisibility.getVisibility());

        ArtifactDetectedObject artifactDetectedObject = new ArtifactDetectedObject(
                x1,
                y1,
                x2,
                y2,
                concept.getIRI(),
                "user",
                edge.getId(),
                resolvedVertex.getId(),
                originalPropertyKey);
        String propertyKey = artifactDetectedObject.getMultivalueKey(MULTI_VALUE_KEY_PREFIX);
        LumifyProperties.DETECTED_OBJECT.addPropertyValue(artifactVertex, propertyKey, artifactDetectedObject, lumifyVisibility.getVisibility(), authorizations);

        resolvedVertexMutation.addPropertyValue(resolvedVertex.getId(), LumifyProperties.ROW_KEY.getPropertyName(), propertyKey, lumifyVisibility.getVisibility());
        resolvedVertexMutation.save(authorizations);

        graph.flush();

        workQueueRepository.pushElement(edge);
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Related Classes of io.lumify.core.security.LumifyVisibility

  • io.lumify.core.ingest.FileImport
  • io.lumify.core.model.termMention.TermMentionRepository
  • io.lumify.core.util.GraphUtil
  • io.lumify.opencvObjectDetector.OpenCVObjectDetectorPropertyWorker
  • io.lumify.securegraph.model.workspace.SecureGraphWorkspaceRepositoryTest
  • io.lumify.web.routes.edge.DeleteEdgeProperty
  • io.lumify.web.routes.vertex.ResolveDetectedObject
  • io.lumify.web.routes.vertex.ResolveTermEntity
  • io.lumify.web.routes.vertex.UnresolveDetectedObject
  • io.lumify.web.routes.vertex.UnresolveTermEntity
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