979899100101102103104
throw new UnknownParameterException("class"); } Formatter formatter = new AlFormatter(getOut()); formatter.format(alignmentList); } catch (IOException e) { throw new IORuntimeException(e); } }
8283848586878889
writer.close(); Reader resultReader = getReader(getFileInputStream(file .getAbsolutePath())); return resultReader; } catch (IOException e) { throw new IORuntimeException(e); } }
85868788899091929394
if ((c != ' ' && c != '\t' && c != '\r' && c != '\n' && c != '\f')) { builder.append((char)c); } } } catch (IOException e) { throw new IORuntimeException(e); } return builder.toString(); }
157158159160161162163164
&& start < buffer.length) { start += count; } return start; } catch (IOException e) { throw new IORuntimeException(e); } }
172173174175176177178179180181182
private void readCharacter() { int readResult; try { readResult = reader.read(); } catch (IOException e) { throw new IORuntimeException(e); } if (readResult == -1) { length = position; } else { char character = (char)readResult;
103104105106107108109110111112113
entry = zis.getNextEntry(); } return result; } catch (IOException e) { throw new IORuntimeException("IOException reading nested ZipFile", e); } finally { IOUtils.close(zis); } } }
165166167168169170171172173174175
if (name.startsWith(ze.getName())) entries.put(ze.getName(), ze); ze = zis.getNextEntry(); } } catch (IOException e) { throw new IORuntimeException("IOException reading nested ZipFile", e); } finally { IOUtils.close(zis); } }
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public ICloseableDirectory toCloseable() { try { return new NestedCloseableDirectory(archive, this); } catch (IOException e) { throw new IORuntimeException("Exception while creating extracted version of nested zip file", e); } }
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public ICloseableDirectory toCloseable() { try { return new ZipCloseableDirectory(zip, this); } catch (IOException e) { throw new IORuntimeException("IOException opening zip file: " + this, e); } }
246247248249250251252253254255
z = cache.getZipFile(); } else { try { z = new ZipFile(zip); } catch (IOException e) { throw new IORuntimeException("IOException in ZipFileImpl.openZipFile", e); } } return z; }