Examples of InvalidArgument

com.sun.tools.corba.se.idl.InvalidArgument
An invalid argument for the compiler has been encountered.
org.openbel.framework.common.InvalidArgument
BEL runtime exception indicating an invalid argument was provided.
This class should be used in favor of {@link IllegalArgumentException} as itforces a standard for runtime exception reporting.

Examples of org.openbel.framework.common.InvalidArgument

     * @return
     * @throws InvalidArgument Thrown if {@code kam} is null
     */
    public static Kam newInstance(Kam kam) {
        if (kam == null) {
            throw new InvalidArgument("kam", kam);
        }
        return new KamImpl(kam.getKamInfo());
    }

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Examples of org.openbel.framework.common.InvalidArgument

     * @throws InvalidArgument
     */
    public static Kam intersection(Kam kam1, Kam kam2) throws InvalidArgument {


        if (!kam1.getKamInfo().equals(kam2.getKamInfo())) {
            throw new InvalidArgument(
                    "Kam1 and Kam2 must reference the same kam in the KamStore");
        }
        List<KamEdge> kamEdges = new ArrayList<KamEdge>();


        // Check for edges in Kam1 that are also in Kam2

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Examples of org.openbel.framework.common.InvalidArgument

            throws InvalidArgument {


        // Make sure that all the edges in the edge list are associated with the Kam
        for (KamEdge kamEdge : kamEdges) {
            if (!kamEdge.getKam().getKamInfo().equals(kam.getKamInfo())) {
                throw new InvalidArgument(
                        "Kamedges do not reference the same Kam.");
            }
        }


        // Check for edges in Kam1 that are also in the list

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Examples of org.openbel.framework.common.InvalidArgument

            throws InvalidArgument {


        // Make sure that all the edges in the edge list are associated with the Kam
        for (KamEdge kamEdge : kamEdges) {
            if (!kamEdge.getKam().getKamInfo().equals(kam.getKamInfo())) {
                throw new InvalidArgument(
                        "Kamedges do not reference the same Kam.");
            }
        }


        // Create a new kam instance and add the edges

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Examples of org.openbel.framework.common.InvalidArgument

     * @throws InvalidArgument
     */
    public static Kam union(Kam kam1, Kam kam2) throws InvalidArgument {


        if (!kam1.getKamInfo().equals(kam2.getKamInfo())) {
            throw new InvalidArgument(
                    "Kam1 and Kam2 must reference the same kam in the KamStore");
        }
        Kam newKam = newInstance(kam1);
        newKam.union(kam1.getEdges());
        newKam.union(kam2.getEdges());

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Examples of org.openbel.framework.common.InvalidArgument

     * @throws InvalidArgument
     */
    public static Kam difference(Kam kam1, Kam kam2) throws InvalidArgument {


        if (!kam1.getKamInfo().equals(kam2.getKamInfo())) {
            throw new InvalidArgument(
                    "Kam1 and Kam2 must reference the same kam in the KamStore");
        }
        List<KamEdge> kamEdges = new ArrayList<KamEdge>();


        // First check for edges in Kam1 that are not in Kam2

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Examples of org.openbel.framework.common.InvalidArgument

     * {@inheritDoc}
     */
    @Override
    public SimplePath[] findPaths(KamNode source, KamNode target) {
        if (source == null) {
            throw new InvalidArgument("Source kam node cannot be null.");
        }


        if (target == null) {
            throw new InvalidArgument("Target kam node cannot be null.");
        }


        if (!kam.contains(source)) {
            throw new InvalidArgument("Source does not exist in KAM.");
        }


        if (!kam.contains(target)) {
            throw new InvalidArgument("Target does not exist in KAM.");
        }


        final Set<KamNode> targets = sizedHashSet(1);
        targets.add(target);

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Examples of org.openbel.framework.common.InvalidArgument

     * {@inheritDoc}
     */
    @Override
    public SimplePath[] findPaths(KamNode[] sources, KamNode[] targets) {
        if (sources == null || sources.length == 0) {
            throw new InvalidArgument(
                    "Source kam nodes cannot be null or empty.");
        }


        if (targets == null || targets.length == 0) {
            throw new InvalidArgument(
                    "Target kam nodes cannot be null or empty.");
        }


        for (final KamNode source : sources) {
            if (!kam.contains(source)) {
                throw new InvalidArgument("Source does not exist in KAM.");
            }
        }


        final Set<KamNode> targetSet = new HashSet<KamNode>(targets.length);
        for (final KamNode target : targets) {
            if (!kam.contains(target)) {
                throw new InvalidArgument("Target does not exist in KAM.");
            }


            targetSet.add(target);
        }


        final List<SimplePath> pathsFound = new ArrayList<SimplePath>();
        for (final KamNode source : sources) {
            if (!kam.contains(source)) {
                throw new InvalidArgument("Source does not exist in KAM.");
            }


            pathsFound.addAll(runDepthFirstSearch(kam, source, targetSet));
        }

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Examples of org.openbel.framework.common.InvalidArgument

     * {@inheritDoc}
     */
    @Override
    public SimplePath[] interconnect(KamNode[] sources) {
        if (sources == null || sources.length < 2) {
            throw new InvalidArgument(
                    "Source kam nodes cannot be null and must contain at least two source nodes.");
        }


        // build out target set, check that each node is in the KAM
        final Set<KamNode> targetSet = new HashSet<KamNode>(sources.length);
        for (int i = 0; i < sources.length; i++) {
            final KamNode source = sources[i];


            if (!kam.contains(source)) {
                throw new InvalidArgument("Source does not exist in KAM.");
            }


            targetSet.add(source);
        }

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Examples of org.openbel.framework.common.InvalidArgument

     * {@inheritDoc}
     */
    @Override
    public SimplePath[] scan(KamNode source) {
        if (source == null) {
            throw new InvalidArgument("Source kam node cannot be null.");
        }


        if (!kam.contains(source)) {
            throw new InvalidArgument("Source does not exist in KAM.");
        }


        final List<SimplePath> pathsFound = runDepthFirstScan(kam, source);
        return pathsFound.toArray(new SimplePath[pathsFound.size()]);
    }

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