Examples of InsertionVariationCodec

Examples of net.sf.cram.encoding.read_features.InsertionVariationCodec

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  public BitCodec<InsertionVariation> buildCodec(CramHeader header,
      CompressionHeader compression,
      SequenceBaseProvider referenceBaseProvider,
      DefaultMutableTreeNode parent) throws CramCompressionException {

    InsertionVariationCodec codec = new InsertionVariationCodec();
    DefaultMutableTreeNode node = buildNode(codec, "Insertion codec");
    parent.add(node);

    codec.insertBasesCodec = register(
        bitCodecFactory.buildByteArrayCodec(compression
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