Examples of InputDataObjectType

org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType
Application Inputs. The paramters describe how inputs are passed to the application. name: Name of the parameter. value: Value of the parameter. A default value could be set during registration. type: Data type of the parameter applicationArguement: The argument flag sent to the application. Such as -p pressure. standardInput: When this value is set, the parameter is sent as standard input rather than a parameter. Typically this is passed using redirection operator ">". userFriendlyDescription: Description to be displayed at the user interface. metaData: Any metadat. This is typically ignore by Airavata and is used by gateways for application configuration.

Examples of org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType

            System.out.println("#### Registering NWChem Interface #### \n");


            List<String> appModules = new ArrayList<String>();
            appModules.add(nwChemModuleId);


            InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Water_Molecule_Input", null,
                    DataType.URI, null, false, "Water Molecule Input File - water.nw", null);


            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);

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Examples of org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType

            System.out.println("#### Registering Trinity Interface #### \n");


            List<String> appModules = new ArrayList<String>();
            appModules.add(trinityModuleId);


            InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("RNA_Seq_Left_Input", null,
                    DataType.URI, null, false, "RNA-Seq Left Library - reads.left.fq", null);


            InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("RNA_Seq_Right_Input", null,
                    DataType.URI, null, false, "RNA-Seq Right Library - reads.right.fq", null);


            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);

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Examples of org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType

            System.out.println("#### Registering WRF Interface #### \n");


            List<String> appModules = new ArrayList<String>();
            appModules.add(wrfModuleId);


            InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Config_Namelist_File", null,
                    DataType.URI, null, false, "Namelist Configuration File - namelist.input", null);


            InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("WRF_Initial_Conditions", null,
                    DataType.URI, null, false, "Initial Conditions File - wrfinput_d01", null);


            InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("WRF_Boundary_File", null,
                    DataType.URI, null, false, "Boundary Conditions File - wrfbdy_d01", null);


            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);

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Examples of org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType

                                                              DataType type,
                                                              String applicationArgument,
                                                              boolean standardInput,
                                                              String userFriendlyDesc,
                                                              String metadata){
        InputDataObjectType appInput = new InputDataObjectType();
        appInput.setName(name);
        appInput.setValue(value);
        appInput.setType(type);
        appInput.setMetaData(metadata);
        appInput.setApplicationArgument(applicationArgument);
        appInput.setUserFriendlyDescription(userFriendlyDesc);
        appInput.setStandardInput(standardInput);
        return appInput;
    }

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Examples of org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType

    resourceJobManager.setPushMonitoringEndpoint(pushMonitoringEndpoint);
    return resourceJobManager;
  }


  public static InputDataObjectType createAppInput (String inputName, String argumentName, String description, String value, org.apache.airavata.model.appcatalog.appinterface.DataType type ){
        InputDataObjectType input = new InputDataObjectType();
//        input.setIsEmpty(false);
        if (inputName!=null) {
      input.setName(inputName);
    }
    if (value!=null) {
      input.setValue(value);
    }
    if (type!=null) {
      input.setType(type);
    }
    if (argumentName!=null) {
      input.setApplicationArgument(argumentName);
    }
    if (description!=null) {
      input.setUserFriendlyDescription(description);
    }
    return input;
    }

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