Examples of InitialAssignment

org.sbml.jsbml.InitialAssignment
Represents the initialAssignment XML element of a SBML file. @author Andreas Dräger @author Marine Dumousseau @since 0.8 @version $Rev: 1533 $

Examples of org.sbml.jsbml.InitialAssignment

    assertEquals(M.getFunctionDefinition(0), fd);
  }


  @Test
  public void test_Model_createInitialAssignment() {
    InitialAssignment c = M.createInitialAssignment();
    assertTrue(c != null);
    assertTrue(M.getInitialAssignmentCount() == 1);
    assertEquals(M.getInitialAssignment(0), c);
  }

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Examples of org.sbml.jsbml.InitialAssignment

    o3 = null;
  }


  @Test
  public void test_Model_removeInitialAssignment() {
    InitialAssignment o1, o2, o3;
    o1 = M.createInitialAssignment();
    o1.setMetaId("c1");
    o2 = M.createInitialAssignment();
    o2.setMetaId("c2");
    o3 = M.createInitialAssignment();
    o3.setMetaId("c3");
    o3.setVariable("test");

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Examples of org.sbml.jsbml.InitialAssignment

          }
        }
      }
      if (model.isSetListOfInitialAssignments()) {
        for (int i = 0; i < model.getInitialAssignmentCount(); i++) {
          InitialAssignment initialAssignment = model
              .getInitialAssignment(i);


          setInitialAssignmentSymbol(initialAssignment, model);
        }
      }

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Examples of org.sbml.jsbml.InitialAssignment

          }
        }
      }
      if (model.isSetListOfInitialAssignments()) {
        for (int i = 0; i < model.getInitialAssignmentCount(); i++) {
          InitialAssignment initialAssignment = model
              .getInitialAssignment(i);


          if (initialAssignment.isSetVariable()
              && !initialAssignment.isSetVariableInstance()) {
            log4jLogger.warn("No Symbol matches the symbolID of initialAssignment.");
          }
        }
      }
      if (model.isSetListOfReactions()) {

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Examples of org.sbml.jsbml.InitialAssignment

            } else if (elementName.equals("initialAssignment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfInitialAssignments)
                && ((model.getLevel() == 2 && model
                    .getVersion() > 1) || model.getLevel() >= 3)) {
              InitialAssignment initialAssignment = (InitialAssignment) newContextObject;
              model.addInitialAssignment(initialAssignment);


              return initialAssignment;
            } else if (elementName.equals("algebraicRule")
                && list.getSBaseListType().equals(

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Examples of org.sbml.jsbml.InitialAssignment

    assertEquals(M.getFunctionDefinition(0), fd);
  }


  @Test
  public void test_Model_createInitialAssignment() {
    InitialAssignment c = M.createInitialAssignment();
    assertTrue(c != null);
    assertTrue(M.getNumInitialAssignments() == 1);
    assertEquals(M.getInitialAssignment(0), c);
  }

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Examples of org.sbml.jsbml.InitialAssignment

    o3 = null;
  }


  @Test
  public void test_Model_removeInitialAssignment() {
    InitialAssignment o1, o2, o3;
    o1 = M.createInitialAssignment();
    o1.setMetaId("c1");
    o2 = M.createInitialAssignment();
    o2.setMetaId("c2");
    o3 = M.createInitialAssignment();
    o3.setMetaId("c3");
    o3.setVariable("test");

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Examples of org.sbml.jsbml.InitialAssignment

          }
        }
      }
      if (model.isSetListOfInitialAssignments()) {
        for (int i = 0; i < model.getNumInitialAssignments(); i++) {
          InitialAssignment initialAssignment = model
              .getInitialAssignment(i);


          setInitialAssignmentSymbol(initialAssignment, model);
        }
      }

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Examples of org.sbml.jsbml.InitialAssignment

    assertEquals(M.getFunctionDefinition(0), fd);
  }


  @Test
  public void test_Model_createInitialAssignment() {
    InitialAssignment c = M.createInitialAssignment();
    assertTrue(c != null);
    assertTrue(M.getNumInitialAssignments() == 1);
    assertEquals(M.getInitialAssignment(0), c);
  }

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Examples of org.sbml.jsbml.InitialAssignment

    o3 = null;
  }


  @Test
  public void test_Model_removeInitialAssignment() {
    InitialAssignment o1, o2, o3;
    o1 = M.createInitialAssignment();
    o1.setMetaId("c1");
    o2 = M.createInitialAssignment();
    o2.setMetaId("c2");
    o3 = M.createInitialAssignment();
    o3.setMetaId("c3");
    o3.setVariable("test");

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