Examples of HMMParameters

stallone.hmm.HMMParameters
This is a basic implementation of IHMMParameters that may be used. However, the user can also choose to implement his own IHMMParameters. This implementation contains transition matrix estimation and stationary distribution estimation. @author noe

Examples of stallone.hmm.HMMParameters

        }
    }


    public IHMMParameters parameters(int nstates, boolean _isReversible, boolean _isStationary)
    {
        IHMMParameters par = new HMMParameters(nstates, _isReversible, _isStationary);
        // initialize transition matrix
        IDoubleArray T0 = doublesNew.matrix(nstates,nstates);
        doubles.fill(T0, 1.0/(double)nstates);
        par.setTransitionMatrix(T0);
        return par;
    }

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Examples of stallone.hmm.HMMParameters

        // initial p0
        IDoubleArray p0 = Doubles.create.array(nstates, 1.0/(double)nstates);
        // initial output parameters
        IDoubleArray[] parOut = initialParametersGaussian(_obs, nstates);
        // initial parameters
        IHMMParameters initialParameters = new HMMParameters(T, p0, parOut, false, true);


        return emGaussian(_obs, initialParameters);
    }

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