throw new IllegalArgumentException(gene + " is NOT valid, only allows " + ClassifierFactory.RRNA_16S_GENE + " and " + ClassifierFactory.FUNGALLSU_GENE);
}
}
} catch (Exception e) {
System.out.println("Command Error: " + e.getMessage());
new HelpFormatter().printHelp(120, "ComparisonCmd", "", options, "", true);
return;
}
if (propFile == null && gene == null) {
gene = ClassifierFactory.RRNA_16S_GENE;