Examples of GFacAPI

Examples of org.apache.airavata.core.gfac.GfacAPI

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            GFacConfiguration gFacConfiguration = new GFacConfiguration(EmbeddedGFacInvoker.this.configuration.getMyProxyServer(),
                    EmbeddedGFacInvoker.this.configuration.getMyProxyUsername(),
                    EmbeddedGFacInvoker.this.configuration.getMyProxyPassphrase(), EmbeddedGFacInvoker.this.configuration.getMyProxyLifetime(),
                    EmbeddedGFacInvoker.this.airavataAPI, EmbeddedGFacInvoker.this.configuration.getTrustedCertLocation());

            GfacAPI gfacAPI1 = new GfacAPI();
            InvocationContext defaultInvocationContext = gfacAPI1.gridJobSubmit(jobContext,
                    gFacConfiguration, this.nodeID, this.notifier.getWorkflowID().toASCIIString());
            ParameterContextImpl outputParamContext = (ParameterContextImpl) defaultInvocationContext
                    .<ActualParameter>getMessageContext("output");
            if (outputParamContext.getNames().hasNext()) {
                /*
 
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Examples of org.apache.airavata.core.gfac.GfacAPI

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////            invocationContext.getExecutionContext().setSecurityContextHeader(header);
//            //todo if there's amazoneWebServices context we need to set that value, this will refer in EC2Provider
//        }else {
        try {

            gfacAPI = new GfacAPI();
            String workflowNodeId = WorkflowContextHeaderBuilder.getCurrentContextHeader().getWorkflowMonitoringContext().getWorkflowNodeId();
            String workflowInstanceId = WorkflowContextHeaderBuilder.getCurrentContextHeader().getWorkflowMonitoringContext().getWorkflowInstanceId();
            invocationContext = gfacAPI.gridJobSubmit(jobContext, (GFacConfiguration) context.getProperty(GFacService.GFAC_CONFIGURATION),workflowNodeId,workflowInstanceId);
            /*
             * Add notifiable object
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Examples of org.apache.airavata.core.gfac.GfacAPI

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        //TODO: send security context header from Xbaya and handle it
//        if(document.getContextHeader().getSecurityContext().getAmazonWebservices() != null){
////            invocationContext.getExecutionContext().setSecurityContextHeader(header);
//            //todo if there's amazoneWebServices context we need to set that value, this will refer in EC2Provider
//        }else {
            gfacAPI = new GfacAPI();
            invocationContext = gfacAPI.gridJobSubmit(jobContext, (GFacConfiguration) context.getProperty(GFacService.GFAC_CONFIGURATION));
//        }
        try {
            /*
             * Add notifiable object
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Examples of org.apache.airavata.core.gfac.GfacAPI

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                        GFacConfiguration gFacConfiguration = new GFacConfiguration(EmbeddedGFacInvoker.this.configuration.getMyProxyServer(),
                                EmbeddedGFacInvoker.this.configuration.getMyProxyUsername(),
                            EmbeddedGFacInvoker.this.configuration.getMyProxyPassphrase(),EmbeddedGFacInvoker.this.configuration.getMyProxyLifetime(),
                                EmbeddedGFacInvoker.this.registry, EmbeddedGFacInvoker.this.configuration.getTrustedCertLocation());

                        GfacAPI gfacAPI1 = new GfacAPI();
                        InvocationContext defaultInvocationContext = gfacAPI1.gridJobSubmit(jobContext, gFacConfiguration);
                        ParameterContextImpl outputParamContext = (ParameterContextImpl) defaultInvocationContext
                                .<ActualParameter>getMessageContext("output");
                        if (outputParamContext.getNames().hasNext()) {
                            /*
                            * Process Output
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Examples of org.apache.airavata.core.gfac.GfacAPI

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        //TODO: send security context header from Xbaya and handle it
//        if(document.getContextHeader().getSecurityContext().getAmazonWebservices() != null){
////            invocationContext.getExecutionContext().setSecurityContextHeader(header);
//            //todo if there's amazoneWebServices context we need to set that value, this will refer in EC2Provider
//        }else {
            gfacAPI = new GfacAPI();
            invocationContext = gfacAPI.gridJobSubmit(jobContext, (GFacConfiguration) context.getProperty(GFacService.GFAC_CONFIGURATION));
//        }
        try {
            /*
             * Add notifiable object
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Examples of org.apache.airavata.core.gfac.GfacAPI

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                        GFacConfiguration gFacConfiguration = new GFacConfiguration(EmbeddedGFacInvoker.this.configuration.getMyProxyServer(),
                                EmbeddedGFacInvoker.this.configuration.getMyProxyUsername(),
                            EmbeddedGFacInvoker.this.configuration.getMyProxyPassphrase(),EmbeddedGFacInvoker.this.configuration.getMyProxyLifetime(),
                                EmbeddedGFacInvoker.this.registry, EmbeddedGFacInvoker.this.configuration.getTrustedCertLocation());

                        GfacAPI gfacAPI1 = new GfacAPI();
                        InvocationContext defaultInvocationContext = gfacAPI1.gridJobSubmit(jobContext, gFacConfiguration);
                        ParameterContextImpl outputParamContext = (ParameterContextImpl) defaultInvocationContext
                                .<ActualParameter>getMessageContext("output");
                        if (outputParamContext.getNames().hasNext()) {
                            /*
                            * Process Output
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Examples of org.apache.airavata.core.gfac.GfacAPI

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                        GFacConfiguration gFacConfiguration = new GFacConfiguration(EmbeddedGFacInvoker.this.configuration.getMyProxyServer(),
                                EmbeddedGFacInvoker.this.configuration.getMyProxyUsername(),
                            EmbeddedGFacInvoker.this.configuration.getMyProxyPassphrase(),EmbeddedGFacInvoker.this.configuration.getMyProxyLifetime(),
                                EmbeddedGFacInvoker.this.registry, EmbeddedGFacInvoker.this.configuration.getTrustedCertLocation());

                        GfacAPI gfacAPI1 = new GfacAPI();
                        InvocationContext defaultInvocationContext = gfacAPI1.gridJobSubmit(jobContext, gFacConfiguration);
                        ParameterContextImpl outputParamContext = (ParameterContextImpl) defaultInvocationContext
                                .<ActualParameter>getMessageContext("output");
                        if (outputParamContext.getNames().hasNext()) {
                            /*
                            * Process Output
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Examples of org.apache.airavata.gfac.GFacAPI

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            jobExecutionContext.setApplicationContext(applicationContext);

            jobExecutionContext.setOutMessageContext(getOutParameters(serviceDescription));
            jobExecutionContext.setInMessageContext(new MessageContext(actualParameters));

            GFacAPI gfacAPI1 = new GFacAPI();
            gfacAPI1.submitJob(jobExecutionContext);

            OMFactory fac = OMAbstractFactory.getOMFactory();
            OMNamespace omNs = fac.createOMNamespace("http://ws.apache.org/axis2/xsd", "ns1");
            OMElement outputElement = fac.createOMElement("invokeResponse", omNs);
            MessageContext outMessageContext = jobExecutionContext.getOutMessageContext();
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Examples of org.apache.airavata.gfac.GFacAPI

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    }

    @Test
    public void testLocalProvider() throws GFacException {
        GFacAPI gFacAPI = new GFacAPI();
        gFacAPI.submitJob(jobExecutionContext);
        MessageContext outMessageContext = jobExecutionContext.getOutMessageContext();
        Assert.assertEquals(MappingFactory.toString((ActualParameter)outMessageContext.getParameter("echo_output")), "hello");
    }
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Examples of org.apache.airavata.gfac.GFacAPI

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        jobExecutionContext.setOutMessageContext(outMessage);
    }

    @Test
    public void testGramProvider() throws GFacException {
        GFacAPI gFacAPI = new GFacAPI();
        gFacAPI.submitJob(jobExecutionContext);
        MessageContext outMessageContext = jobExecutionContext.getOutMessageContext();
        Assert.assertEquals(MappingFactory.
                toString((ActualParameter) outMessageContext.getParameter("genome_output")), "476");
    }
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