Package fork.lib.bio.anno.genomic

Examples of fork.lib.bio.anno.genomic.BedGraphBuffer

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public void writeToFile(File out)throws Exception{
    out.getParentFile().mkdirs();
    LandscapeBuffer lb= new BedGraphBuffer(f);
    LandscapeComparatorBuffer lc = new LandscapeComparatorBuffer(lb, lbref) {
            @Override
            public double newValue(double v, double refv) {
                if(refv<0.01){
                    refv=0.01;
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    File datf= new File(dir+"/data/chip-seq/norm/norm_"+samp+".wig");
   

    LandscapeBuffer lb= new BedGraphBuffer(datf);
    GenomicRegionsBuilder gb= new BedReader(regf).getGenomicRegionsBuilder();

   
   
    ScanIntra si = new ScanIntra(gb, lb);
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Related Classes of fork.lib.bio.anno.genomic.BedGraphBuffer

  • data.cerevisiae.inhouse.a_norm.NormChipChipSignal
  • data.cerevisiae.inhouse.a_norm.NormChipSeqRPM
  • data.cerevisiae.inhouse.a_norm.NormChipSeqZero
  • data.cerevisiae.lee2007.NormToLee
  • data.cerevisiae.region.scan.LinkAntisense
  • data.cerevisiae.region.scan.ScanIntra
  • data.cerevisiae.test.ratio.ToRatio
  • data.human.inhouse.norm.NormChipSeq
  • data.human.statham2014mods.NormTest
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